PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027155486.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 181aa    MW: 20261.6 Da    PI: 4.4302
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027155486.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.54.2e-1270153795
                     .-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   7 psdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      s+v+k++ +v+p +   ++   k   +    + + +g+sWe+++   ++s++  ++ + Wk+F+++ngLk+gD +  +l+++s+++  +k
  XP_027155486.1  70 LSHVNKLCHMVFPSRLR-SNlPAK---T-VPAVVTCRGKSWEMTF--LGGSQKLRFEvQSWKRFASDNGLKVGDAIFWELMESSDEKVSFK 153
                     58999********9975.663322...2.23556789********..999999555449********************996655544333 PP
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    
MSEEGKMESN EKVDSSAYTA DGEVIDVNVQ DSEAKDIELH HDNDGLDQSL VDDEFSPLSE  60
EPFYHHVVSL SHVNKLCHMV FPSRLRSNLP AKTVPAVVTC RGKSWEMTFL GGSQKLRFEV  120
QSWKRFASDN GLKVGDAIFW ELMESSDEKV SFKVQIIRGD FPSELQAQVN GETAATPILI  180
E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-06B3 family protein