PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027154455.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 362aa MW: 40237.3 Da PI: 5.1264 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.7 | 1.3e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +++ +v ++G g+W++++++ g++R++k+c++rw +yl XP_027154455.1 14 RGPWTPEEDAKILAYVSRHGIGNWTLVPQKAGLNRCGKSCRLRWTNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.2e-15 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++T+eE+e ++++++ G++ W+ Ia+ ++ gRt++++k++w++ XP_027154455.1 68 DNFTPEEEECILELHRTIGSR-WSWIAKQLP-GRTDNDVKNYWNT 110 68*******************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence |
MGRPPCCDKA NVKRGPWTPE EDAKILAYVS RHGIGNWTLV PQKAGLNRCG KSCRLRWTNY 60 LRPDLKHDNF TPEEEECILE LHRTIGSRWS WIAKQLPGRT DNDVKNYWNT KLKKKLFNMG 120 IDPVTHKPFS QIFTEFGKLG NLPSTINQNA LLNTEPRIKP EPLLLPQKFP NANNLQIIEP 180 YGRTLSGNFL GQAASQLQIN GQETLILPHL LGGISPSTSS PSSSSSVMNF GSQSFPCEPP 240 QLQKSPSSPS NWNETILVDP FPSAGIEQNE EDYKIRGISS PDDISSAVVQ EETPLHAATS 300 IIENEVNDKA GVSCYGLKPE PEAMRYMESS SSAADSFLES ILASDSQMQL EFPELLDGFC 360 DY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 8e-76 | MYB family protein |