PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027154415.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 546aa MW: 59388.8 Da PI: 9.4114

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027154415.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H XP_027154415.1 6 FVCEVCNKGFQREQNLQLHRRGH 28 89*******************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKTTK EVKRKVYLCP EPTCVHHHPS 60 RALGDLTGIK KHYSRKHGEK KYKCNKCAKK YAVHSDWKAH TKTCGTREYK CDCGTLFSRR 120 DSFITHRAFC DALAQESARN PPPLGIGASQ LFGSSSNSST MSMDMSQIGS QMSAGQDHDH 180 QNQPKADMLR LGSARTGVTG QFDNLIGSSM GSALRPSKSM ASSSYFLPES DQEDYHLENH 240 SQHEFFSNKT LHHGLMQFSD LQNNSSASAG SSIFNLSIFP SSSNAGNLGN NSPNSTSNIS 300 SSFLFSNLCN SSHHHHASGS SNGGSSLFSD HLVRQHLSSA SIPSHYSTSI QSNSISPYMS 360 ATALLQKAAQ LSSTTSNSTV AFLKSFTSGA SSSGTKPDPD PISSTQFGGI FGDYNTGNHI 420 YEFMSSITGP RSSIFRPFGG APHEHDYGYS ATKLNFGEQS LRHRSPSFSN LEQASKMQQN 480 LGVRFGGADQ GLTRDFLGVG PAGELVRSMS GGGFGQREHG VEIKPLDSER KTAPESPPFG 540 GGVNFR

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKTTK EVKRKVYLCP EPTCVHHHPS  60
RALGDLTGIK KHYSRKHGEK KYKCNKCAKK YAVHSDWKAH TKTCGTREYK CDCGTLFSRR  120
DSFITHRAFC DALAQESARN PPPLGIGASQ LFGSSSNSST MSMDMSQIGS QMSAGQDHDH  180
QNQPKADMLR LGSARTGVTG QFDNLIGSSM GSALRPSKSM ASSSYFLPES DQEDYHLENH  240
SQHEFFSNKT LHHGLMQFSD LQNNSSASAG SSIFNLSIFP SSSNAGNLGN NSPNSTSNIS  300
SSFLFSNLCN SSHHHHASGS SNGGSSLFSD HLVRQHLSSA SIPSHYSTSI QSNSISPYMS  360
ATALLQKAAQ LSSTTSNSTV AFLKSFTSGA SSSGTKPDPD PISSTQFGGI FGDYNTGNHI  420
YEFMSSITGP RSSIFRPFGG APHEHDYGYS ATKLNFGEQS LRHRSPSFSN LEQASKMQQN  480
LGVRFGGADQ GLTRDFLGVG PAGELVRSMS GGGFGQREHG VEIKPLDSER KTAPESPPFG  540
GGVNFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	2e-94	C2H2 family protein