PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027154044.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 527aa    MW: 59147.7 Da    PI: 8.1451
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027154044.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.53.9e-21161251199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k l++s+v++  ++ lp +f+++h   +++++ ++ledesg+++e+k+i +k++    l++GW++Fv a++L egD+++F+l+g ++f  +v 
  XP_027154044.1 161 FVKLLVRSHVGSCFWMGLPVPFCKTHL--PRKDTAVVLEDESGEQFEIKYISEKTG----LSAGWRKFVAAHKLVEGDVLIFQLIGPTTF--KVL 247
                     89************************5..456779***************666666....*************************97777..787 PP

                     EE-S CS
              B3  96 vfrk 99 
                     v+r+
  XP_027154044.1 248 VIRA 251
                     7775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    
MRLKIKPVQP SPSPEVQYQE NHQVTADQEV LKTEAVEEEG QACGWLIPDG NNPMISNSEN  60
NKNNPPELSP TTTPVPQYLG KRKRKPKELI DEISPIIVRR KKKQPSVSKS EQAITDGGGK  120
HVSKQEKSAD AGSRNPVQVK PATMIRAEEV QSSLGNEYPS FVKLLVRSHV GSCFWMGLPV  180
PFCKTHLPRK DTAVVLEDES GEQFEIKYIS EKTGLSAGWR KFVAAHKLVE GDVLIFQLIG  240
PTTFKVLVIR ANDLTEVDGA LSLLNLDTLA KQSDAIVEGN VDLQNKKKKR PKSLPLTVVQ  300
KKKQKAGLSR SILPHLGHLE EQSGNDSDEV ASEVLEGSKF SADAVRFRDI KGFEEFRIMV  360
NGVCIDSELP EHVRRKYYEL CCSKNVFLHE RFLPGLHCKL AAGMIFEAVN TAEAIRACKV  420
TTSRKEFEKW EKSLRSFELL GMNVGFLRAR MRRLLSMAFE GEGASEAKRY WEAKNARACT  480
EDEIRNLEAK LVELKATSEK YDAEIEALKS KAESYEILFQ EEVNAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
181103KRKRKPKELIDEISPIIVRRKKK
282104KRKRKPKELIDEISPIIVRRKKK
382102RKRKPKELIDEISPIIVRRKK
483105KRKRKPKELIDEISPIIVRRKKK
5286303KKKKRPKSLPLTVVQKKK
6286305KKKKRPKSLPLTVVQKKKQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-39B3 family protein