PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027153376.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 324aa MW: 35688.7 Da PI: 6.9983

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027153376.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.3	7.5e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +v+++G+g+W+++++ g++R+ k+c++rw +yl XP_027153376.1 14 KGPWTPEEDIMLVTYVQEHGPGNWRAVPANTGLRRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	48.2	2.5e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l XP_027153376.1 67 RGNFTDQEEKMIIQLQALLGNK-WAAIAAYLP-ERTDNDIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MGRPPCCDKV GVKKGPWTPE EDIMLVTYVQ EHGPGNWRAV PANTGLRRCS KSCRLRWTNY 60 LRPGIKRGNF TDQEEKMIIQ LQALLGNKWA AIAAYLPERT DNDIKNFWNT HLKKKLKKLQ 120 TGSDSSSPRN ALSSSHSISK GQWERRLQTD IKTAKQALHD ALSLEGSIPA PDSKPCDGHL 180 SYTEPGQGSS TYASSTENIA RLLKGWVKNP SPRKSEQSKS SSTQQSFCNA ATDCTSSDGT 240 PSAESKSGID LSEAFESLFG FESFESSTSE FSQSTSPEAS IFQGESKPDQ GGAQVPFSML 300 LENWLLDGKD DLTNFSFDET ANLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	3e-92	MYB family protein