PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027153110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 323aa MW: 36558.2 Da PI: 4.6142 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.6e-19 | 87 | 140 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe +++++ e++ +LAk l+L+ rqV +WFqNrRa++k XP_027153110.1 87 KKRRLTAEQVQFLERSFELENKLDPERKVQLAKDLSLQPRQVAIWFQNRRARYK 140 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.7 | 4.9e-41 | 86 | 178 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl++eqv++LE+sFe e+kL+perKv+la++L lqprqva+WFqnrRAR+ktkqlEk+y+ Lk++yd+l+++ ++L ke+e+L++e+++ XP_027153110.1 86 EKKRRLTAEQVQFLERSFELENKLDPERKVQLAKDLSLQPRQVAIWFQNRRARYKTKQLEKEYDCLKSSYDKLRADYDTLFKENESLKNEVHS 178 69**************************************************************************************99975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence |
MEGCGGNITG TSSVLLQNER LPCSSHEALD SLWISNSSPP PFHGSTSMVN FGDARGENTR 60 EKTFFAQRDK GDDGSESYDN CFHQPEKKRR LTAEQVQFLE RSFELENKLD PERKVQLAKD 120 LSLQPRQVAI WFQNRRARYK TKQLEKEYDC LKSSYDKLRA DYDTLFKENE SLKNEVHSLA 180 EKLVQRERGK AKSEPLDSST ISPLNAEPQK ANPITLSPNV PEMPVSVKQE DASSAKSDVF 240 DSDSSHCTDG NHSSLMVPDD SSHVFEPELS DFSQDEDDSL SRSLLQPTGF PPKLEYECYN 300 DLQCNSGNLG FSVEDQSTWF WAY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 143 | RRARYKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-45 | HD-ZIP family protein |