PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027150688.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 369aa MW: 40288.3 Da PI: 9.2771 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.9 | 6.5e-20 | 24 | 69 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ll ++v+++G+++W++I++ ++ gR++k+c++rw + XP_027150688.1 24 KGPWSPEEDDLLQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 69 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.4 | 2.8e-17 | 78 | 120 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a++++G++ W+tIar + gRt++ +k++w++ XP_027150688.1 78 AFTPEEDDAIIRAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 120 79******************.*********.***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence |
MANINNNISA STTITVRKDA DRIKGPWSPE EDDLLQQLVQ KHGPRNWSLI SKSIPGRSGK 60 SCRLRWCNQL SPQVEHRAFT PEEDDAIIRA HAKFGNKWAT IARLLSGRTD NAIKNHWNST 120 LKRKCSSITS SDEATNDYSN DFPLHHHQPL KRTASTGSGG HVSGGLSLNP GSPSGSDVSS 180 SSLPNTSSSH VFKPVARAGP VFPPHQVVET TSENITDPPT SLSLSLPGVD STEASTRSTD 240 STQPKAPIQL LPPPPPPSPP APVDQQNGRK QIAFGSQVQP QDKVFVPFTG ELLAVMQEMI 300 RNEVRNYMMG MEQQQNLHQQ HQQQQQQMMM MHGGIGMGMG MGMCMQQASV ANEGFRNAAV 360 KRVGINKID |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 6e-85 | MYB family protein |