PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024996904.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 340aa    MW: 37956.5 Da    PI: 5.8963
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024996904.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-19132182155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+W+AeIrdp     r  r +lg+f+taeeAa  +++a+ +l+g
  XP_024996904.1 132 KKFRGVRQRP-WGKWAAEIRDPM----RrVRLWLGTFDTAEEAAMVYDHAAIQLRG 182
                     59********.**********83....46*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MELLFMENQQ MMAPVKQSVH KTSVTMVSNL LCPKRKLPDG SSSAVSPRVV RISVTDAYAT  60
DSSGDEESGL FNRRRVRKFV NEVRIEARSK DDSTVNENRN RKEDKMVVNR RKKVAGKGYA  120
TAEKRLKVDS GKKFRGVRQR PWGKWAAEIR DPMRRVRLWL GTFDTAEEAA MVYDHAAIQL  180
RGPDALTNFT IPPPATLQLP EKKPSSVSSG YNSGNDSQNN NKTTSPKSVL SFPSASTEKS  240
AAESIHSSPY NDGANEASEI AVPETFTDFR PFDDDFSTSD SFDFPKLDPF IFDPIMFQES  300
DPLDMFFGSG KDFSIGSSWP MDDYLPDYGD IFGSDPLVAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.16e-54ERF family protein