PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996777.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 319aa MW: 37543.1 Da PI: 7.0729

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996777.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84	1.9e-26	60	141	2	87
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 W++qe+++ i++r e+e+++ ++k++k lWe v++km+e g++r+p qCk+kw+nl +ryk ++ +++ +s+++p+fd+++a XP_024996777.1 60 WSQQETRDFIAIRGELERDFTTAKRNKSLWEVVAAKMKEIGYRRTPDQCKCKWKNLVNRYKGKETLDRE----NSRSFPFFDEMHA 141 ************************************************************9999997....4778*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence
MFRSTSGGGG GGGGRDNNES LAGLTQMMMM NVPPRQPAMV VGGGADAEDF LRRDDRVPSW 60 SQQETRDFIA IRGELERDFT TAKRNKSLWE VVAAKMKEIG YRRTPDQCKC KWKNLVNRYK 120 GKETLDRENS RSFPFFDEMH ALFTERTSNT PPTPFDPEAT SSHSKKRGIK MDSYQSLEEL 180 SEDEDEYEDE EIKIAKATVP PRKKPEREKR ARTSSLDKPP TPKQPSSGNN SIREILHDFF 240 QQQEMIETQW RQLMEKHDYE RRVFDQEWRQ SMERLEMERM RIEQSWREKE EQRRMREESR 300 AERRDALLTA LLNKLVHEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	1e-31	Trihelix family protein