PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024996742.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 577aa    MW: 62899.1 Da    PI: 4.7066
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024996742.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.92e-1382085711374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++++la+al++++  la++++ +m ++a+yf+ ALa+r+++    +y    p++  e++  e l++   f+e +P+lkf+h
  XP_024996742.1 208 LVHTLMACAEAVQQDNMKLADALVKHVGLLAASQAGAMGKVATYFAGALAQRIYK----IY----PQDGLETSCWEILQM--HFYESCPYLKFAH 292
                     689***************************************************9....44....444443333444333..5************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea++g++rvH+iDf+++qG+QWpaL+qaLa R++gpp +R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +va++l+d++
  XP_024996742.1 293 FTANQAILEAFAGATRVHVIDFSLNQGMQWPALMQALALRTDGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVANSLADID 387
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseer 282
                       +L+++p   E++aVn+v++lhrll++++++e+    vL+ ++ ++Pk+v++veqe++hn++ Fl+rf eal+yys++fdsl ++ l + ++++
  XP_024996742.1 388 AAMLDIRPseVEVVAVNSVFELHRLLARPGAVEK----VLNSINAMKPKIVTLVEQESNHNGAVFLDRFNEALHYYSTMFDSLeSSALTQPTSQD 478
                     ********88899*********************....*********************************************666778888*** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      ++++++lgr+i+nvvaceg++r+erhetl++Wr r+++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  XP_024996742.1 479 LVMSEVYLGRQICNVVACEGTDRVERHETLSQWRTRMNSAGFDPVHLGSNAFKQASMLLALFAgGDGYRVEENDGCLMLGWHTRPLIATSAWK 571
                     ********************************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    
MKRDRERKKE AKASISSSSL ASGKGKDLHQ PLPDSGGMDE LLEVLGYKVR STDMADVAQK  60
LEQLEMVMGE DGIFQLSDTV HYNPSDLSGW VQSMLSELNN NASDLSPSTN FDIVLPGESS  120
STTMIDFSNN KEIDGQQQGS KLYDDDPYDL RAIAGGAIYG TTTDESPVPR NGIKRIKSAV  180
AGSEAVAAPP ESPRPVVLVD SQEAGIRLVH TLMACAEAVQ QDNMKLADAL VKHVGLLAAS  240
QAGAMGKVAT YFAGALAQRI YKIYPQDGLE TSCWEILQMH FYESCPYLKF AHFTANQAIL  300
EAFAGATRVH VIDFSLNQGM QWPALMQALA LRTDGPPAFR LTGIGPPQPD NTDALQQVGW  360
KLAQLADTIG VEFEFRGFVA NSLADIDAAM LDIRPSEVEV VAVNSVFELH RLLARPGAVE  420
KVLNSINAMK PKIVTLVEQE SNHNGAVFLD RFNEALHYYS TMFDSLESSA LTQPTSQDLV  480
MSEVYLGRQI CNVVACEGTD RVERHETLSQ WRTRMNSAGF DPVHLGSNAF KQASMLLALF  540
AGGDGYRVEE NDGCLMLGWH TRPLIATSAW KPGGMET
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein