PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996696.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 410aa MW: 46942.8 Da PI: 6.2298

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996696.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166	1.3e-51	20	148	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePwd+++k++ +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk + XP_024996696.1 20 VPPGFRFHPTEEELLHYYLRKKVAYEKIDL-DVIHDVDLNKLEPWDIQEKCRIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVI 113 69**************************.9***********964443122456******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s + + +g++ktLvfykgrap+g+k+dW+mheyrl XP_024996696.1 114 YS-SFRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 148 .8889***************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MSSSKEEMSF SVNVNGQSKV PPGFRFHPTE EELLHYYLRK KVAYEKIDLD VIHDVDLNKL 60 EPWDIQEKCR IGSTPQNDWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KVIYSSFRRI 120 GMRKTLVFYK GRAPHGQKSD WIMHEYRLDD DTITTQDYGS VSNLCDSNQE EGWVVCRVFK 180 KKNYHKALES PQRSSSAPSI DSNPQMQSLN RDGGVHDQFL VYIGNRSCKK EMESVANITT 240 TTSDYNPMEQ LVDPTNERFL HLPRLDTTTM TTSGPFSSAT TFDQDSSFQT HNSMTHLLTE 300 PENSMNTSDT REQHRDSWAD LDRLVASQLN GQVHPSKQMY GCYDEPNEDI CFALHHHDQE 360 PEPSQLHGST SMARPNQTAA VGYTNEIELW SFAQSSSQSS SPDPFYHLSV

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MSSSKEEMSF SVNVNGQSKV PPGFRFHPTE EELLHYYLRK KVAYEKIDLD VIHDVDLNKL  60
EPWDIQEKCR IGSTPQNDWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KVIYSSFRRI  120
GMRKTLVFYK GRAPHGQKSD WIMHEYRLDD DTITTQDYGS VSNLCDSNQE EGWVVCRVFK  180
KKNYHKALES PQRSSSAPSI DSNPQMQSLN RDGGVHDQFL VYIGNRSCKK EMESVANITT  240
TTSDYNPMEQ LVDPTNERFL HLPRLDTTTM TTSGPFSSAT TFDQDSSFQT HNSMTHLLTE  300
PENSMNTSDT REQHRDSWAD LDRLVASQLN GQVHPSKQMY GCYDEPNEDI CFALHHHDQE  360
PEPSQLHGST SMARPNQTAA VGYTNEIELW SFAQSSSQSS SPDPFYHLSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	1e-111	NAC family protein