PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996565.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 639aa MW: 71965.4 Da PI: 8.7791

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996565.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C + F ++ n++rH+r+H XP_024996565.1 77 KCDKCAREFCSPINYRRHMRVH 98 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 639 aa Download sequence
MPVAKLLGTG IPDAMKSEEG TDSLDTFIRQ AVGKEPLFSF SRTGDSPMQW IQLLHALDQQ 60 DLPGWPLLAP MKVQMQKCDK CAREFCSPIN YRRHMRVHRR SMNIHKEPQK YRDLLGAFWD 120 KLSYDEAKDI MSFKDVNLEE VPGSSIVRNI AANLRKPVFL SLPQVYVKAG SALVDIVQGR 180 PSRLPISSEE LFSLLDDASE KTFLCAGTAE SLQKYVFDGE AGKIGLEMKN LIACTSFLAE 240 QKLVKAWLAD KDAEALRCQK LLVEEEEAAQ RRQAELLERK RQRKIRQKEQ RAKDHSNGMK 300 VNPLIPDEHV ATPLDPSSNE EVVNIEAQGG CSSDHSDTAA TEQQKMQENG SQHFIARWQV 360 PKSQRGGRNG FHSNQNGNMI KWEQAQKARE QRVNGSKVWT KKPKFENGGR ELVKSRVQND 420 AIYQTTQTNC QLMIGSISVT VRNCQAEFEE KVDREIKTNS VQNGTNRSTL KFWRPRNDTR 480 GQLAYRGNGQ ILKENATPEN GTLSSENDHQ SCDLNGNDIR GTDDSNVQVE NSAMPKPMPF 540 SIDAAKAFLA QRWKEAISGD HVKLVLSSVA EQPPGQLDFE ENRQVAESED PMVVGSSKGR 600 LGKVAEIDST THTNVKPKFR TKPEKNMKTK YIPKQRAVY

Sequence ? help Back to Top

Protein Sequence Length: 639 aa Download sequence

MPVAKLLGTG IPDAMKSEEG TDSLDTFIRQ AVGKEPLFSF SRTGDSPMQW IQLLHALDQQ  60
DLPGWPLLAP MKVQMQKCDK CAREFCSPIN YRRHMRVHRR SMNIHKEPQK YRDLLGAFWD  120
KLSYDEAKDI MSFKDVNLEE VPGSSIVRNI AANLRKPVFL SLPQVYVKAG SALVDIVQGR  180
PSRLPISSEE LFSLLDDASE KTFLCAGTAE SLQKYVFDGE AGKIGLEMKN LIACTSFLAE  240
QKLVKAWLAD KDAEALRCQK LLVEEEEAAQ RRQAELLERK RQRKIRQKEQ RAKDHSNGMK  300
VNPLIPDEHV ATPLDPSSNE EVVNIEAQGG CSSDHSDTAA TEQQKMQENG SQHFIARWQV  360
PKSQRGGRNG FHSNQNGNMI KWEQAQKARE QRVNGSKVWT KKPKFENGGR ELVKSRVQND  420
AIYQTTQTNC QLMIGSISVT VRNCQAEFEE KVDREIKTNS VQNGTNRSTL KFWRPRNDTR  480
GQLAYRGNGQ ILKENATPEN GTLSSENDHQ SCDLNGNDIR GTDDSNVQVE NSAMPKPMPF  540
SIDAAKAFLA QRWKEAISGD HVKLVLSSVA EQPPGQLDFE ENRQVAESED PMVVGSSKGR  600
LGKVAEIDST THTNVKPKFR TKPEKNMKTK YIPKQRAVY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-136	C2H2 family protein