PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996545.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 550aa MW: 61283.3 Da PI: 5.2133

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996545.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174	4.5e-54	4	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp GfrF+Ptdeel+++yL++k++g++ e+ ++i+evd++k+ePwdLp + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++ XP_024996545.1 4 LPLGFRFRPTDEELINYYLRQKINGRHSEV-HIIPEVDVCKLEPWDLPdQsVIKTDDPEWFFFCPRDRKYPNGHRSNRATSAGYWKATGKDRTIK 97 699**********************999.89**********96447777888*********************************** PP NAM 94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ + + +g+kktLvfy+grapkge+t+W+mheyr+ XP_024996545.1 98 SRgrsDAQIIGMKKTLVFYRGRAPKGERTHWIMHEYRA 135 97766777**************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
MEALPLGFRF RPTDEELINY YLRQKINGRH SEVHIIPEVD VCKLEPWDLP DQSVIKTDDP 60 EWFFFCPRDR KYPNGHRSNR ATSAGYWKAT GKDRTIKSRG RSDAQIIGMK KTLVFYRGRA 120 PKGERTHWIM HEYRATEKDL DGTNPGQSAY VLCRLFRKAD EITDASKCDE AEPTGLSPTT 180 HKSSPGNPSV DFLQAPSVQD VQIDGTEKWA TDTADNLTHN AVIPFENRIS DVDETTAKET 240 AEKICPELGA YLDSRFANDF GSDNNGLDFQ DGTSEQDIAL SELLSLLQNG NECSFKETFD 300 QKNTEVGCET PISGPVPTVP QGLPFCRTTK SDAEVAIDVA QKQILVPPRS CYSSVNLPEN 360 GGVNIINDQG ASSAGSNVGS IYSRGNYWEQ STSQTNPHTV ANFPIDRPEI KIRTRQSQTG 420 QSQTDPSSEN VMGQGRAARR LRLQVEPSSV SISHGDETSS TVSEVCDDAE DTARSFDGSE 480 RINPELVPKH DAKENDQKHN RLQMKPLILV RAYCGGRFLS SSLIQIMSIF LVIFVMMISL 540 GVRERPIFHL

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

MEALPLGFRF RPTDEELINY YLRQKINGRH SEVHIIPEVD VCKLEPWDLP DQSVIKTDDP  60
EWFFFCPRDR KYPNGHRSNR ATSAGYWKAT GKDRTIKSRG RSDAQIIGMK KTLVFYRGRA  120
PKGERTHWIM HEYRATEKDL DGTNPGQSAY VLCRLFRKAD EITDASKCDE AEPTGLSPTT  180
HKSSPGNPSV DFLQAPSVQD VQIDGTEKWA TDTADNLTHN AVIPFENRIS DVDETTAKET  240
AEKICPELGA YLDSRFANDF GSDNNGLDFQ DGTSEQDIAL SELLSLLQNG NECSFKETFD  300
QKNTEVGCET PISGPVPTVP QGLPFCRTTK SDAEVAIDVA QKQILVPPRS CYSSVNLPEN  360
GGVNIINDQG ASSAGSNVGS IYSRGNYWEQ STSQTNPHTV ANFPIDRPEI KIRTRQSQTG  420
QSQTDPSSEN VMGQGRAARR LRLQVEPSSV SISHGDETSS TVSEVCDDAE DTARSFDGSE  480
RINPELVPKH DAKENDQKHN RLQMKPLILV RAYCGGRFLS SSLIQIMSIF LVIFVMMISL  540
GVRERPIFHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.2	1e-110	NAC family protein