PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G35580.2 | ||||||||
Common Name | CBNAC, NTL9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 534aa MW: 59721.9 Da PI: 4.6405 | ||||||||
Description | NAC transcription factor-like 9 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.9 | 4.7e-54 | 9 | 135 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lp GfrF+Ptdeelv++yL+ k++g++ ++ +vi+++d++k+ePwdLp+ +k+++ ew+fF++rd+ky++g+r+nrat+sgyWkatgkd++++s k AT4G35580.2 9 LPLGFRFRPTDEELVNHYLRLKINGRHSDV-RVIPDIDVCKWEPWDLPAlsVIKTDDPEWFFFCPRDRKYPNGHRSNRATDSGYWKATGKDRSIKS-K 104 699************************999.99***************4447888889**************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyr 127 ++l+g+kktLvfy+grapkge+t+W+mheyr AT4G35580.2 105 KTLIGMKKTLVFYRGRAPKGERTNWIMHEYR 135 99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.63E-64 | 4 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.036 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-28 | 10 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0071470 | Biological Process | cellular response to osmotic stress | ||||
GO:1900426 | Biological Process | positive regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MGAVSMESLP LGFRFRPTDE ELVNHYLRLK INGRHSDVRV IPDIDVCKWE PWDLPALSVI 60 KTDDPEWFFF CPRDRKYPNG HRSNRATDSG YWKATGKDRS IKSKKTLIGM KKTLVFYRGR 120 APKGERTNWI MHEYRPTLKD LDGTSPGQSP YVLCRLFHKP DDRVNGVKSD EAAFTASNKY 180 SPDDTSSDLV QETPSSDAAV EKPSDYSGGC GYAHSNSTAD GTMIEAPEEN LWLSCDLEDQ 240 KAPLPCMDSI YAGDFSYDEI GFQFQDGTSE PDVSLTELLE EVFNNPDDFS CEESISRENP 300 AVSPNGIFSS AKMLQSAAPE DAFFNDFMAF TDTDAEMAQL QYGSEGGASG WPSDTNSYYS 360 DLVQQEQMIN HNTENNLTEG RGIKIRARQP QNRQSTGLIN QGIAPRRIRL QLQSNSEVKE 420 REEVNEGHTV IPEAKEAAAK YSEKSGSLVK PQIKLRARGT IGQVKGERFA DDEKFVVVTG 480 TGAEQKETRR EAMEGGCNGN GGCDGWGRDG YMEDTGEFMT HETQRERERE SNVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-45 | 4 | 159 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-45 | 4 | 159 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-45 | 4 | 159 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-45 | 4 | 159 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 3e-45 | 4 | 159 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-45 | 4 | 159 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.20744 | 0.0 | bud| flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 253132_at | 0.0 | ||||
Expression Atlas | AT4G35580 | - | ||||
AtGenExpress | AT4G35580 | - | ||||
ATTED-II | AT4G35580 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Induced during normal senescence. {ECO:0000269|PubMed:18443413}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). Expressed in guard cells (PubMed:18443413). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:18443413}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00108 | PBM | 26531826 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G35580.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G35580 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY056443 | 0.0 | AY056443.1 Arabidopsis thaliana AT4g35580/F8D20_90 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001119122.1 | 0.0 | NAC transcription factor-like 9 | ||||
Swissprot | F4JN35 | 0.0 | NTL9_ARATH; Protein NTM1-like 9 | ||||
TrEMBL | F4JN33 | 0.0 | F4JN33_ARATH; NAC transcription factor-like 9 | ||||
STRING | AT4G35580.2 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5594 | 28 | 48 | Representative plant | OGRP11726 | 4 | 6 |
Link Out ? help Back to Top | |
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Phytozome | AT4G35580.2 |
Entrez Gene | 829710 |
iHOP | AT4G35580 |
wikigenes | AT4G35580 |