PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024996532.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 217aa MW: 25041.7 Da PI: 9.4439 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.6 | 8e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdae+a+iifs++ klye++s XP_024996532.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSPRSKLYEFAS 59 8***********************************************86 PP | |||||||
2 | K-box | 68.7 | 1.9e-23 | 80 | 171 | 7 | 98 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +s + ++ ++l+q ++ + k+ie L+ ++R+llGe+L+s +++eL ++eqqLe+s+ iR++K+++++eqi++l ke+ l +en +L++k XP_024996532.1 80 NSPCPEDVQHLRQLATGMAKQIELLEVTKRKLLGEGLGSTTIEELLHIEQQLERSVCIIRARKMQVYYEQIQQLHAKEQTLASENATLNEKC 171 446677899*******************************************************************************9985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence |
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEIALIIFSP RSKLYEFASS 60 SMKETIERYR SHVKEIRTQN SPCPEDVQHL RQLATGMAKQ IELLEVTKRK LLGEGLGSTT 120 IEELLHIEQQ LERSVCIIRA RKMQVYYEQI QQLHAKEQTL ASENATLNEK CHFVNEQGSK 180 ERGANFVVTE NEDTISDVET DLFIGQAKWK TKKDRPK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 1e-68 | MIKC_MADS family protein |