PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996387.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bZIP

Protein Properties

Length: 365aa MW: 38928.8 Da PI: 7.346

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996387.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	68.2	1.4e-21	260	322	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN++L+ e+++++ e+++l +++ XP_024996387.1 260 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKEENSSLRAEVSRIRSEYDQLLAQN 322 89*********************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MPPHGFLASS PQAHPYMWGV QHLMPPYGTP PHPYVAMYPH GGIYTHPSMP PGSYPFNPYA 60 MPPNGVTEAS GNTPGNVEVD GKSSDGKEKL PIKRSKGSLG SLNMITGKNN EPSKAGASAN 120 GVYPKSAESG SDGSSEGSDG NSENDSQMKS GSRQDSIEVT GEASQNGNSA HGSQNGGPNA 180 PHSVVNQTMP VMPVSPSGGP GSIPGPTTNL NIGMDYWSGT NSSNIPAIRG KVTSAPVAGG 240 MVTAGSRDSM QSQLWLQQDE RELKRQRRKQ SNRESARRSR LRKQAECDEL AQRAEVLKEE 300 NSSLRAEVSR IRSEYDQLLA QNASLKERLG ETPGREEVTS SGIEQQKGPK GHQDGQTEQL 360 VQSRE

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MPPHGFLASS PQAHPYMWGV QHLMPPYGTP PHPYVAMYPH GGIYTHPSMP PGSYPFNPYA  60
MPPNGVTEAS GNTPGNVEVD GKSSDGKEKL PIKRSKGSLG SLNMITGKNN EPSKAGASAN  120
GVYPKSAESG SDGSSEGSDG NSENDSQMKS GSRQDSIEVT GEASQNGNSA HGSQNGGPNA  180
PHSVVNQTMP VMPVSPSGGP GSIPGPTTNL NIGMDYWSGT NSSNIPAIRG KVTSAPVAGG  240
MVTAGSRDSM QSQLWLQQDE RELKRQRRKQ SNRESARRSR LRKQAECDEL AQRAEVLKEE  300
NSSLRAEVSR IRSEYDQLLA QNASLKERLG ETPGREEVTS SGIEQQKGPK GHQDGQTEQL  360
VQSRE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	277	283	RRSRLRK
2	277	284	RRSRLRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35530.1	1e-129	bZIP family protein