PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996193.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 646aa MW: 73816.2 Da PI: 8.8945

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996193.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.6	1.2e-07	461	502	2	40
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 ++W +eE ell +++ ++++g +W+ I++++g+gR+ +++ XP_024996193.1 461 KPWGKEEIELLRKGIVKYPKGtsrRWEVISEYIGTGRSVEEI 502 69***********************************99876 PP
2	Myb_DNA-binding	26.5	1.5e-08	591	634	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W++ + lv+a k ++++ +W+++a+ ++ g+t +qck + XP_024996193.1 591 VWSAVQETALVQALKTFPKEtnqRWERVAAAVP-GKTVNQCKKQF 634 6******************************.******877 PP

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence
MKARACIRLI TYPDELVNGE AIYVSSNSLP IKASHFEPAG HSFHDVALKL RGYFEEENVA 60 DDNEKLPKDK EHEYMQSSDS YSSKGKKKSG DGANQQDHYA LLGLGHLRYL ATEEQIRKSY 120 RETALKHHPD KQAALLLGEE TEAAKQAKKD EIENHFKAIQ EAYEVLIDPV RRRIYDSTDE 180 FDDEIPTDCS PQDFFKVFGP AFMRNGRWSV IQPIPSLGDD NTSLKDVDAF YDFWYGFKSW 240 REFPHADEFD LEQAESRDHK RWMERQNAKL SEKARKEEHA RIRSLVDNAY KRDPRVLRRK 300 ETLKAEKQKK KEAKFMAKKQ QEEEAARVAE ENRRKKEEED KQAAEAASQQ KKVKEKEKKL 360 LRKERTRLRT LSTAVVSERL LNLSKDDVES ICMALDTLQL RNLCDNMEGK EGHNQAELLK 420 EALSLDHSEK DHVVKISQQN GTVKPNGNVP KPKSTPEKKE KPWGKEEIEL LRKGIVKYPK 480 GTSRRWEVIS EYIGTGRSVE EILKATKTVL LQKPDSSKAF DSFLEKRKPA VSISSPLTTR 540 EEVEGVPLTS MPTEPNGVSS SPAQTEGVSS KPSQDAEKVE PAASSSSDQD VWSAVQETAL 600 VQALKTFPKE TNQRWERVAA AVPGKTVNQC KKQFTLLKEK FRNKKK

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence

MKARACIRLI TYPDELVNGE AIYVSSNSLP IKASHFEPAG HSFHDVALKL RGYFEEENVA  60
DDNEKLPKDK EHEYMQSSDS YSSKGKKKSG DGANQQDHYA LLGLGHLRYL ATEEQIRKSY  120
RETALKHHPD KQAALLLGEE TEAAKQAKKD EIENHFKAIQ EAYEVLIDPV RRRIYDSTDE  180
FDDEIPTDCS PQDFFKVFGP AFMRNGRWSV IQPIPSLGDD NTSLKDVDAF YDFWYGFKSW  240
REFPHADEFD LEQAESRDHK RWMERQNAKL SEKARKEEHA RIRSLVDNAY KRDPRVLRRK  300
ETLKAEKQKK KEAKFMAKKQ QEEEAARVAE ENRRKKEEED KQAAEAASQQ KKVKEKEKKL  360
LRKERTRLRT LSTAVVSERL LNLSKDDVES ICMALDTLQL RNLCDNMEGK EGHNQAELLK  420
EALSLDHSEK DHVVKISQQN GTVKPNGNVP KPKSTPEKKE KPWGKEEIEL LRKGIVKYPK  480
GTSRRWEVIS EYIGTGRSVE EILKATKTVL LQKPDSSKAF DSFLEKRKPA VSISSPLTTR  540
EEVEGVPLTS MPTEPNGVSS SPAQTEGVSS KPSQDAEKVE PAASSSSDQD VWSAVQETAL  600
VQALKTFPKE TNQRWERVAA AVPGKTVNQC KKQFTLLKEK FRNKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11450.1	1e-123	MYB family protein