PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024995942.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 207aa MW: 24138.6 Da PI: 9.7928 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.3 | 2.6e-30 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaev +iifss++klye+ XP_024995942.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSSRDKLYEFG 58 79**********************************************95 PP | |||||||
2 | K-box | 103.2 | 3.3e-34 | 80 | 169 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++e++++s++qe++kLk++ e+Lqr+qRhllGedL++Ls+keL++Le+qLe +l++ R++K+++++eq+eel++ke+el + nk L+ k+ XP_024995942.1 80 NNERETQSWYQEVSKLKAKFESLQRTQRHLLGEDLGPLSVKELHNLEKQLEGALTQARQRKTQIMVEQMEELRRKERELGDMNKHLKIKV 169 67889*********************************************************************************9887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVGLIIFSS RDKLYEFGSV 60 GVMKTLERYQ RCCFNPQDNN NERETQSWYQ EVSKLKAKFE SLQRTQRHLL GEDLGPLSVK 120 ELHNLEKQLE GALTQARQRK TQIMVEQMEE LRRKERELGD MNKHLKIKVS HELSTGLDLV 180 YNQFMHGEGS SVQRNMVGES SIHGWVL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 9e-89 | MIKC_MADS family protein |