PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024995934.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family LBD
Protein Properties Length: 183aa    MW: 19544.2 Da    PI: 8.0412
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024995934.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.11.1e-3613113199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                     +C aCk+lrrkC+k+Cv+apyf +++  +++f++vh++FGa+n  kll  +p ++r da+ sl+yeA  r++dPvyG+v+ +++lqqq+++l+ae
  XP_024995934.1  13 PCGACKFLRRKCVKGCVFAPYFKSDDggTAEFEAVHRVFGARNAAKLLLITPANRRLDAVVSLCYEAVSRVKDPVYGCVAQVFNLQQQIDNLQAE 107
                     7*********************9988667****************************************************************** PP

          DUF260  94 lallke 99 
                     la++++
  XP_024995934.1 108 LAYVQT 113
                     **9987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    
MGGNGGGGGG GSPCGACKFL RRKCVKGCVF APYFKSDDGG TAEFEAVHRV FGARNAAKLL  60
LITPANRRLD AVVSLCYEAV SRVKDPVYGC VAQVFNLQQQ IDNLQAELAY VQTRVSIMKH  120
STSCQSSKNH SPSSFGSTVP SLETPGFSND DSASLDEALF KDIDGLEMLA RELLNKYLPG  180
SKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.12e-54LBD family protein