PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024995934.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LBD | ||||||||
Protein Properties | Length: 183aa MW: 19544.2 Da PI: 8.0412 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.1 | 1.1e-36 | 13 | 113 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+k+Cv+apyf +++ +++f++vh++FGa+n kll +p ++r da+ sl+yeA r++dPvyG+v+ +++lqqq+++l+ae XP_024995934.1 13 PCGACKFLRRKCVKGCVFAPYFKSDDggTAEFEAVHRVFGARNAAKLLLITPANRRLDAVVSLCYEAVSRVKDPVYGCVAQVFNLQQQIDNLQAE 107 7*********************9988667****************************************************************** PP DUF260 94 lallke 99 la++++ XP_024995934.1 108 LAYVQT 113 **9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence |
MGGNGGGGGG GSPCGACKFL RRKCVKGCVF APYFKSDDGG TAEFEAVHRV FGARNAAKLL 60 LITPANRRLD AVVSLCYEAV SRVKDPVYGC VAQVFNLQQQ IDNLQAELAY VQTRVSIMKH 120 STSCQSSKNH SPSSFGSTVP SLETPGFSND DSASLDEALF KDIDGLEMLA RELLNKYLPG 180 SKI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 2e-54 | LBD family protein |