PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024995715.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 299aa MW: 33676.1 Da PI: 8.2873 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.3 | 1.8e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdellv+++k+ G g+W++ ++ g+ R++k+c++rw +yl XP_024995715.1 14 RGPWTQEEDELLVEYIKKNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54 | 3.9e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++l +++++ lG++ W++Ia+ m+ gRt++++k+ w+++l XP_024995715.1 67 RGPFSPEEEKLVIQLHAILGNR-WAAIAAQMP-GRTDNEIKNLWNTHL 112 89********************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence |
MGRAPCCEKT GLKRGPWTQE EDELLVEYIK KNGHGSWRSL PKLAGLLRCG KSCRLRWTNY 60 LRPDIKRGPF SPEEEKLVIQ LHAILGNRWA AIAAQMPGRT DNEIKNLWNT HLRKRLLSIG 120 IDPQTHEPTS VSSPSVGPLK RPSASPSTRH MAQWESARME AEARLSMESS ASVSVLLSSP 180 NKSTTSTDYF LRIWHSEVGE SFQNLNKGKM GCFSPASQTS ESNTTIETEP KPYREPEPRL 240 DGVTFCQGFT RASSPCEMED SSDTSLQLFF DFAGLNDMSF LESNNWFSSS FLRLWVNKP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 1e-113 | MYB family protein |