PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995474.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 640aa MW: 73507.8 Da PI: 7.8427

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995474.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.8	4.5e-07	465	506	2	40
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 ++W +eE ell ++ ++++g +W+ I+ ++g+gR+ +++ XP_024995474.1 465 KPWGKEEIELLRKGMVKHPKGtskRWEVISDYIGTGRSVEEI 506 69***********************************99876 PP
2	Myb_DNA-binding	26.3	1.7e-08	585	630	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 W++ + l++a k ++++ +W+++a+ ++ g+t +qck + XP_024995474.1 585 VWSAVQETALIQALKTFPKEanqRWERVAAAVP-GKTVNQCKKQFTV 630 6******************************.******98765 PP

Sequence ? help Back to Top
Protein Sequence Length: 640 aa Download sequence
MTAQASILRI TYSDELLNGE TIYVSSNCLP VKASRFEPAG HSFHDVALKL CGCFLEENIE 60 DDNENLPKEK EHEYMQSSDS YSSSKGKKKS GDGANQQDHY ALLGLGHLRY LATEEQIRKS 120 YRETALKHHP DKQASLLLGE ETEASKQAKK DEIENHFKAI QEAYEVLIDP VKRRIYDSTD 180 EFDDEIPTDC APQDFFKVFG PAFLRNGRWS VTQPIPLLGD ENSPLKDVDA FYDFWYGFKS 240 WREFPHADEF DLEQAESRDH KRWMERQNAK LSEKARKEEY ARVRSLVDNA YKRDPRVLRR 300 KEMLKAEKQK KKEAKFMAKK LQEEEAARIA EEERRKKEEA EKQAAEAASH QKKIKEKEKK 360 LLRKERTRLR TLSTPVVSQR LHNLSQDDVE NLCMSLDILK LKNLCDNLET REECGQAELL 420 QEALSHHHDN SDHSVKDYVS RNSQRNGSVK VNGNVPKNSM EKKEKPWGKE EIELLRKGMV 480 KHPKGTSKRW EVISDYIGTG RSVEEILKAT KTVLLQKPDS TKAFDSFLDK RKPAVSISSP 540 LTTREEIEGV SSNPTPAEEK PIIQNASDEI VANGVENSVT SDQDVWSAVQ ETALIQALKT 600 FPKEANQRWE RVAAAVPGKT VNQCKKQFTV LKEKFRNKKK

Sequence ? help Back to Top

Protein Sequence Length: 640 aa Download sequence

MTAQASILRI TYSDELLNGE TIYVSSNCLP VKASRFEPAG HSFHDVALKL CGCFLEENIE  60
DDNENLPKEK EHEYMQSSDS YSSSKGKKKS GDGANQQDHY ALLGLGHLRY LATEEQIRKS  120
YRETALKHHP DKQASLLLGE ETEASKQAKK DEIENHFKAI QEAYEVLIDP VKRRIYDSTD  180
EFDDEIPTDC APQDFFKVFG PAFLRNGRWS VTQPIPLLGD ENSPLKDVDA FYDFWYGFKS  240
WREFPHADEF DLEQAESRDH KRWMERQNAK LSEKARKEEY ARVRSLVDNA YKRDPRVLRR  300
KEMLKAEKQK KKEAKFMAKK LQEEEAARIA EEERRKKEEA EKQAAEAASH QKKIKEKEKK  360
LLRKERTRLR TLSTPVVSQR LHNLSQDDVE NLCMSLDILK LKNLCDNLET REECGQAELL  420
QEALSHHHDN SDHSVKDYVS RNSQRNGSVK VNGNVPKNSM EKKEKPWGKE EIELLRKGMV  480
KHPKGTSKRW EVISDYIGTG RSVEEILKAT KTVLLQKPDS TKAFDSFLDK RKPAVSISSP  540
LTTREEIEGV SSNPTPAEEK PIIQNASDEI VANGVENSVT SDQDVWSAVQ ETALIQALKT  600
FPKEANQRWE RVAAAVPGKT VNQCKKQFTV LKEKFRNKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11450.1	0.0	MYB family protein