PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024995318.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 258aa MW: 29169 Da PI: 10.1516 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.4 | 7.9e-18 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+ XP_024995318.1 10 FITNDSARKATFKKRKKGLMKKVNELSTLCGIDACAIIYSP 50 89**************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence |
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVNELSTLCG IDACAIIYSP YEAQPEVWPN 60 NIGVQRVLAQ FKRMPEMEQS KKMVNQESFI RQRITKANEQ LKKQIKENRE KEMTEVMYQC 120 LTGKGSISNL ILPDLNDLGG LVDQTLKDIC RRMESLKKAV PGKAAAAPPP LPPRPQTIVS 180 GNSLIAANEM MTRGVAMHAL EKRPMVDNLS AMEGMQRPQW FTDWINNPSE HNLGLGPGYE 240 MAPFVDNPNP IWPNPYFP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKVKLAFITNDSARKATFKKRK |
2 | 22 | 26 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-66 | M-type_MADS family protein |