PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995283.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 504aa MW: 54925.2 Da PI: 7.7458

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995283.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.6	3.4e-30	245	304	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt++ +Cpv+k+v+r+aed +v+++tYeg+Hnh+ XP_024995283.1 245 MNDGCQWRKYGQKIAKGNPCPRAYYRCTMSpSCPVRKHVQRCAEDRSVLITTYEGTHNHP 304 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence
MDIKSSTSME AASSLNMEKS MFSFFEVKEA AKMKNNIHLH GDQTLVSKAS SQAVNDGDPS 60 LSNEEDDPAE DYKQDGLISS AKADMGQVRQ ENQKLKHTLT RVLKDYKLSQ MHFNDFFQQE 120 VPKSSECLAP DHQEGDGTEL ISLSLGTLSS HKPKRDGPKK VNCFSKSKED SDDDQELKLG 180 LGCEFDLTPT RVVINDLKKD ETTQIMEPPV NSLKTQRIED NDLLDQIPLK KARVSVKVIC 240 DTQTMNDGCQ WRKYGQKIAK GNPCPRAYYR CTMSPSCPVR KHVQRCAEDR SVLITTYEGT 300 HNHPLSVSAT AMASTTSAAA SMLKSTSSTS QPGLTTTAAS STATTFSSPH GMTYNSRAPQ 360 YPFYLPNTTI STYQSHPTIT LDLTSSPHFN RSTSSNFGMG APRFSSSTCL NFSSPSSSTS 420 SSIESNYKNP IAFSYLGRQT LNEAVNPTSL NDSYKNNSSS ALQQHSAETI AAATKALTSN 480 PSFRSALAAS ITSLVRNAGG GARI

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence

MDIKSSTSME AASSLNMEKS MFSFFEVKEA AKMKNNIHLH GDQTLVSKAS SQAVNDGDPS  60
LSNEEDDPAE DYKQDGLISS AKADMGQVRQ ENQKLKHTLT RVLKDYKLSQ MHFNDFFQQE  120
VPKSSECLAP DHQEGDGTEL ISLSLGTLSS HKPKRDGPKK VNCFSKSKED SDDDQELKLG  180
LGCEFDLTPT RVVINDLKKD ETTQIMEPPV NSLKTQRIED NDLLDQIPLK KARVSVKVIC  240
DTQTMNDGCQ WRKYGQKIAK GNPCPRAYYR CTMSPSCPVR KHVQRCAEDR SVLITTYEGT  300
HNHPLSVSAT AMASTTSAAA SMLKSTSSTS QPGLTTTAAS STATTFSSPH GMTYNSRAPQ  360
YPFYLPNTTI STYQSHPTIT LDLTSSPHFN RSTSSNFGMG APRFSSSTCL NFSSPSSSTS  420
SSIESNYKNP IAFSYLGRQT LNEAVNPTSL NDSYKNNSSS ALQQHSAETI AAATKALTSN  480
PSFRSALAAS ITSLVRNAGG GARI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	3e-45	WRKY family protein