PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024994993.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 26753.5 Da PI: 8.6817 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.1 | 6.3e-08 | 24 | 72 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ E++RR+++N ++ L +l+P+ + +++ ++ + +A++YI+ L XP_024994993.1 24 RKITEKNRRNNMNFLYSHLFSLIPPhLI--SKGGAQVSDRVDRAIDYIQTL 72 6899*********************773..44448888***********98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence |
MERKNKCSGS GSGSGSLKMK KPERKITEKN RRNNMNFLYS HLFSLIPPHL ISKGGAQVSD 60 RVDRAIDYIQ TLKDSLEMNK KKKEQLLSKK RSFQHTKTNI VRQSLDVQIQ EMSPDLDAVL 120 VTGLKNHSDF CDVVQLLERY STEVALANFS SSGHSIFHLR HKKMEADEMS KRIKNLIEGS 180 SKMKELELEL ELGNDDIDIN GSSSSSSNIS KWDFDIQSTL WEWELEMLPM NMLS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20970.1 | 1e-11 | bHLH family protein |