PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994881.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Protein Properties

Length: 396aa MW: 44492.7 Da PI: 8.7872

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994881.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	34.7	3.1e-11	25	103	16	99
EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 l lp f++++ +k +kt +l++ +g sW++k+ +k ++ y +++GW++ +k+ +L+ D+vv +l++ f++ v +f++ XP_024994881.1 25 LALPTAFVKRYLEK--IPKTPILKTATGeSSWRLKI--KKIGEDYCFSDGWEKLAKDAQLRIMDIVVVSLID--PFTFEVAFFDA 103 78*******534..56788999977769**..*****************************987..77778888876 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MTTESSEEGP PSFFKVVRCP SAPHLALPTA FVKRYLEKIP KTPILKTATG ESSWRLKIKK 60 IGEDYCFSDG WEKLAKDAQL RIMDIVVVSL IDPFTFEVAF FDANGCDKDL PLNNTSWVYL 120 SLSVYLYCTI IKIKWVLNDG SLAQEFSGDA DDVDEVMSDE EDDGDEVMPN ENLCFQKVIS 180 EKSHRYTMTL PQKFVKAAEL ENRSGIRMKD HEGKEWIMGL LVEKYHNRHS LSSAQVLKNK 240 KAGKQENGNR KETPANMEGV KRKRGRPRVE KPGNGNGGGV KVKSEDEAEV IKRKRGRPPL 300 QKHRDGGVKI ENQSEVVKRK RGRPRVEGKI KIEDGDGDGD GDCDCDGDGS VVKIKVEKGG 360 FSGVEVKTET ETEVAAVKRK RGRPPLDRSK QRVIYF

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MTTESSEEGP PSFFKVVRCP SAPHLALPTA FVKRYLEKIP KTPILKTATG ESSWRLKIKK  60
IGEDYCFSDG WEKLAKDAQL RIMDIVVVSL IDPFTFEVAF FDANGCDKDL PLNNTSWVYL  120
SLSVYLYCTI IKIKWVLNDG SLAQEFSGDA DDVDEVMSDE EDDGDEVMPN ENLCFQKVIS  180
EKSHRYTMTL PQKFVKAAEL ENRSGIRMKD HEGKEWIMGL LVEKYHNRHS LSSAQVLKNK  240
KAGKQENGNR KETPANMEGV KRKRGRPRVE KPGNGNGGGV KVKSEDEAEV IKRKRGRPPL  300
QKHRDGGVKI ENQSEVVKRK RGRPRVEGKI KIEDGDGDGD GDCDCDGDGS VVKIKVEKGG  360
FSGVEVKTET ETEVAAVKRK RGRPPLDRSK QRVIYF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	292	320	KRKRGRPPLQKHRDGGVKIENQSEVVKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26680.1	4e-08	B3 family protein