PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G26680.1 | ||||||||
Common Name | REM17, T24P13.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 920aa MW: 104833 Da PI: 9.8945 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.6 | 1.7e-16 | 23 | 101 | 12 | 96 |
HTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 12 ksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++ l +p f+++h +g ++++kt+tl++ s ++W vk+ ++ + lt+GW++F+ a++L++gD+vvF+l+g++ f +v++ AT1G26680.1 23 SRTHLNIPVAFFSKHvEGRNNQNKTVTLRSdASDKTWLVKM--DGLK----LTDGWEDFAFAHDLRTGDIVVFRLEGEMVF--HVTA 101 344488**********77888999*****97889*******..6666....************************998888..6665 PP | |||||||
2 | B3 | 69.4 | 5e-22 | 159 | 249 | 7 | 99 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ l+++rl++p +fa+ +g++k +sk++ l++e+grsW++ l+++k++ +++ ++GW++F+++ng+++g +Fkl++ +++ +v++++r+ AT1G26680.1 159 SAWCLSNDRLYIPLSFARLNGLNKINSKKIYLQNEEGRSWKLVLRHDKSGMQTFVQSGWRRFCSENGIRQGQY-TFKLVR-KSAPPVIRLCRA 249 5667899*****************************************************************6.***998.8999******97 PP | |||||||
3 | B3 | 66.3 | 4.5e-21 | 271 | 360 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++++l++++l+lp++f++++ ++k++s +++l++e+g +W + l ++ ++ ++l kGW +F++ n++k+gD++ Fkl+g + +++v++++ AT1G26680.1 271 SVTPSSLRNDLLYLPRSFVNSNRLDKRCS-EIVLKNEQGVKWPLVL--KRFKSVTYLPKGWTSFCQVNRIKAGDSFKFKLVG-TWKKPVLSLCP 360 578999*******************9998.****************..999999**************************99.77778998886 PP | |||||||
4 | B3 | 57.1 | 3.4e-18 | 441 | 530 | 6 | 98 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++++l +++l+lp++f++++ ++k++s +++l++e+g++ ++ l++ kk+ ++l+kGW +F++ n++k+gD++ Fkl+g + ++v++++ AT1G26680.1 441 VNPSSLYKDQLYLPRNFVSSNFLDKRCS-EIVLKNERGEKRTLVLKHFKKD-LTFLKKGWTSFCQVNRIKAGDSFKFKLVG-TWNKPVLSLCP 530 6788999999***********9999998.****************665555.478************************99.77778988886 PP | |||||||
5 | B3 | 67.6 | 1.8e-21 | 620 | 707 | 5 | 93 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +++++l+ +rl+lp +f++++g++k ++k+++l +e+g sW+++l+y++ +++++ + GW++F++ang+ +g ++Fkl++ + + +v AT1G26680.1 620 NVTASSLNYDRLYLPLSFVSSNGLDKMNGKEIVLLNEEGLSWKFNLKYNQAGKHTYVRPGWSRFCDANGMSQGQQFTFKLVQ-KHGPPV 707 67899999***********************************************************************998.555555 PP | |||||||
6 | B3 | 70.4 | 2.3e-22 | 732 | 822 | 6 | 98 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++++ k++ l+l k+f++++g++k + k+++l++++gr+W++ l++ k+ + +++++GW +F++ ngLk+gD++ Fkl+g +++++v++++ AT1G26680.1 732 VTASSIKKDKLYLWKSFVSSNGLDKGC-KKIILKNKWGREWKLVLKHYKSNCFTIIKRGWTSFCQGNGLKAGDSFKFKLVG-TGEKPVLSLCP 822 6788999999**************977.7**************************************************99.77779999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.9E-23 | 10 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-19 | 10 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.211 | 12 | 105 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.16E-13 | 13 | 100 | No hit | No description |
SMART | SM01019 | 3.8E-23 | 15 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-10 | 23 | 97 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.4E-16 | 147 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-16 | 151 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.662 | 153 | 250 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.4E-28 | 154 | 250 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-20 | 158 | 249 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.02E-15 | 162 | 248 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-20 | 260 | 361 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-20 | 263 | 362 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.00E-13 | 267 | 350 | No hit | No description |
PROSITE profile | PS50863 | 14.367 | 267 | 361 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-26 | 268 | 362 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.0E-20 | 271 | 360 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-19 | 429 | 531 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.92E-18 | 430 | 530 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.29E-13 | 436 | 530 | No hit | No description |
PROSITE profile | PS50863 | 12.407 | 436 | 531 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-27 | 437 | 532 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-17 | 441 | 530 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-20 | 609 | 707 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-19 | 610 | 710 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.452 | 616 | 714 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.07E-14 | 616 | 704 | No hit | No description |
SMART | SM01019 | 1.7E-27 | 617 | 714 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-20 | 619 | 708 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-21 | 719 | 822 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.87E-22 | 723 | 824 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.75E-20 | 727 | 822 | No hit | No description |
PROSITE profile | PS50863 | 14.381 | 727 | 823 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.6E-31 | 728 | 824 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-21 | 731 | 823 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0020003 | anatomy | plant ovule | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 920 aa Download sequence Send to blast |
MADQSLLHSP INPHFFQPIL TESRTHLNIP VAFFSKHVEG RNNQNKTVTL RSDASDKTWL 60 VKMDGLKLTD GWEDFAFAHD LRTGDIVVFR LEGEMVFHVT ALGPSCCEIQ YHTSSHNIND 120 DDRNDQINIA SRNSSRVKKN PRKKVESSLD HSRFVAKVSA WCLSNDRLYI PLSFARLNGL 180 NKINSKKIYL QNEEGRSWKL VLRHDKSGMQ TFVQSGWRRF CSENGIRQGQ YTFKLVRKSA 240 PPVIRLCRAK AKPKQRSVAE YSSDHSCFEG SVTPSSLRND LLYLPRSFVN SNRLDKRCSE 300 IVLKNEQGVK WPLVLKRFKS VTYLPKGWTS FCQVNRIKAG DSFKFKLVGT WKKPVLSLCP 360 TQSNNHKTPL ECSEGNKSEE SEEDCLEVKK KKYWSRCRAS VENMDDDQTN IGNSSRKKRV 420 SKNPREKVES SSDHSSFVGS VNPSSLYKDQ LYLPRNFVSS NFLDKRCSEI VLKNERGEKR 480 TLVLKHFKKD LTFLKKGWTS FCQVNRIKAG DSFKFKLVGT WNKPVLSLCP TETNYHKTPL 540 ACSEGNKSEE SEEEGTEDKN TSQDCLEVKK RKYWSTCRAS AENIDDDQTN IGNSSKEKRV 600 KKNPVKKAES SSDHSSFVAN VTASSLNYDR LYLPLSFVSS NGLDKMNGKE IVLLNEEGLS 660 WKFNLKYNQA GKHTYVRPGW SRFCDANGMS QGQQFTFKLV QKHGPPVMYL SLSEHRPKSE 720 SSSHRSYFVG SVTASSIKKD KLYLWKSFVS SNGLDKGCKK IILKNKWGRE WKLVLKHYKS 780 NCFTIIKRGW TSFCQGNGLK AGDSFKFKLV GTGEKPVLSL CPAESSHEKI PLECPEGIDD 840 VNSLSSNPSS GDDSSRSEES EEENMEDKNI SQDCLETKKR KYCSSSSYSQ NRFVTLTLTR 900 SAFQTYKLVS FFNNYASRLS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.41208 | 0.0 | seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 261260_at | 0.0 | ||||
Expression Atlas | AT1G26680 | - | ||||
AtGenExpress | AT1G26680 | - | ||||
ATTED-II | AT1G26680 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G26680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G26680 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT002947 | 0.0 | BT002947.1 Arabidopsis thaliana clone RAFL15-02-G15 (R20317) unknown protein (At1g26680) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_173990.2 | 0.0 | transcriptional factor B3 family protein | ||||
Swissprot | Q84WP3 | 0.0 | REM17_ARATH; B3 domain-containing protein REM17 | ||||
TrEMBL | A0A178WFQ4 | 0.0 | A0A178WFQ4_ARATH; Transcriptional factor B3 family protein | ||||
TrEMBL | A0A384LI42 | 0.0 | A0A384LI42_ARATH; Uncharacterized protein | ||||
STRING | AT1G26680.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5781 | 16 | 48 | Representative plant | OGRP2682 | 2 | 31 |
Link Out ? help Back to Top | |
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Phytozome | AT1G26680.1 |
Entrez Gene | 839209 |
iHOP | AT1G26680 |
wikigenes | AT1G26680 |
Publications ? help Back to Top | |||
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