PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994829.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TALE

Protein Properties

Length: 612aa MW: 68372.8 Da PI: 6.5597

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994829.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.2	6.5e-09	392	429	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + XP_024994829.1 392 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 429 664459******************************88 PP
2	BELL	116.6	1.2e-37	254	324	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 + elqk+k+kLl++leeVd+rY++y++q+++v+ssFeavag g+a++Y +lA+ka+SrhFrcL+d +++qi XP_024994829.1 254 FLELQKRKSKLLQMLEEVDRRYNHYCDQMKAVVSSFEAVAGNGAATVYSALASKAMSRHFRCLRDGVVGQI 324 569******************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence
MVEEGKIIEG NNMMVGTATN FDPYVNSSSN PNTDVSYGGG THTSEFFNFD QHNSVSHNSD 60 LFWKPSSPKP IMIPGGGAAA GDFCQFDESS LQRCVLIPCE PNERPSQGLS LSLSSTNPST 120 IGIQPFELVR PPQDHHHHHQ QQQQHQGYFG KPMNMHEQHD MMTDDQDDEF LRKSGNIMNS 180 GSGGSQHQSA QYHIRSSRYL VPAQDLLNEF CNLGTKQIDR STKAKRTSQW QDHDNLNHSN 240 ASSSKNKPLN SLEFLELQKR KSKLLQMLEE VDRRYNHYCD QMKAVVSSFE AVAGNGAATV 300 YSALASKAMS RHFRCLRDGV VGQIKATKKA MGEKDISAPG ATRGETPRLR LLDQTLRQQR 360 AFQQMTMMDS HPWRPQRGLP ERSVSILRAW LFEHFLHPYP SDVDKHILAR QTGLSRSQVS 420 NWFINARVRL WKPMVEEMYV EETKENDNEN DEDVHDRSFN VAIDENNAIP QMEQKPTVEQ 480 LIRRDSECLS SIINHHHHTT KTLDHDFHQN FTRVSSEPFG AVELDFSAYN HSFGGSTGGG 540 VSLTLGLQQH AGGGGGGGGG GGGGGVSLFY PRDHMEDCQT AVQYSSLLEG DQGQNLPYRN 600 LMGAQLLHDL AG

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence

MVEEGKIIEG NNMMVGTATN FDPYVNSSSN PNTDVSYGGG THTSEFFNFD QHNSVSHNSD  60
LFWKPSSPKP IMIPGGGAAA GDFCQFDESS LQRCVLIPCE PNERPSQGLS LSLSSTNPST  120
IGIQPFELVR PPQDHHHHHQ QQQQHQGYFG KPMNMHEQHD MMTDDQDDEF LRKSGNIMNS  180
GSGGSQHQSA QYHIRSSRYL VPAQDLLNEF CNLGTKQIDR STKAKRTSQW QDHDNLNHSN  240
ASSSKNKPLN SLEFLELQKR KSKLLQMLEE VDRRYNHYCD QMKAVVSSFE AVAGNGAATV  300
YSALASKAMS RHFRCLRDGV VGQIKATKKA MGEKDISAPG ATRGETPRLR LLDQTLRQQR  360
AFQQMTMMDS HPWRPQRGLP ERSVSILRAW LFEHFLHPYP SDVDKHILAR QTGLSRSQVS  420
NWFINARVRL WKPMVEEMYV EETKENDNEN DEDVHDRSFN VAIDENNAIP QMEQKPTVEQ  480
LIRRDSECLS SIINHHHHTT KTLDHDFHQN FTRVSSEPFG AVELDFSAYN HSFGGSTGGG  540
VSLTLGLQQH AGGGGGGGGG GGGGGVSLFY PRDHMEDCQT AVQYSSLLEG DQGQNLPYRN  600
LMGAQLLHDL AG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	1e-122	TALE family protein