PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024994800.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HSF
Protein Properties Length: 272aa    MW: 30682.5 Da    PI: 4.997
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024994800.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.91e-35251162102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++ +e+isw+e+gn+fvv+ + efa+++LpkyFkh+nf+SF+RQLn+YgF+k+ +++         weF++++F++g+k+ll++
  XP_024994800.1  25 FLTKTYQLVDDPSSDEMISWNEHGNAFVVWRPAEFARDLLPKYFKHNNFSSFIRQLNTYGFRKTVSDR---------WEFANDYFRRGEKTLLRE 110
                     9***************************************************************9999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_024994800.1 111 IHRRKI 116
                     ***985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MATSPVGKTG ELTVGESQRT IPTPFLTKTY QLVDDPSSDE MISWNEHGNA FVVWRPAEFA  60
RDLLPKYFKH NNFSSFIRQL NTYGFRKTVS DRWEFANDYF RRGEKTLLRE IHRRKISTTT  120
SATQAVITAI PLVGLPIPTS PANSSEELAG SSNSSPIITM IHGQPCTTKT DLVEENERLK  180
EQNSNLRCEL SHLRSLCSNV VNLMSNFVSN QPEMEIDGSE EKAVEGSATG PEVEEEMCPR  240
LFGVSLGVKR VRRSAIEEQE DDEKMVEEQK FM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.16e-73HSF family protein