PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994763.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TALE

Protein Properties

Length: 490aa MW: 55202.2 Da PI: 6.1978

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994763.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.2	3.2e-09	422	460	18	54
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e++ LA k gLt +qV++WF N R + XP_024994763.1 422 MFQNflHPYPKDAEKQLLAVKSGLTRSQVSNWFINARVR 460 5887779******************************88 PP
2	BELL	73.8	2.8e-24	300	366	5	72
BELL 5 lqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +++kk +Ll lle+Vd+rY+q+ ++++tvis+F+av++l++ ++++ + l++i++ +++L+++i+++i XP_024994763.1 300 VEMKKKHLLALLEMVDERYNQCLDEIHTVISAFHAVTELNP-QIHACFSLHTITFFYKSLRERISNHI 366 789************************************.*********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MENSGFNMPM GMAAENFIIP DENYPPAAMV SFNQKAFLDQ NHHIMPGFPM LSMIPGEPVN 60 GSGITNPTEH LGSNFPSIGH MDVPISATAL AALLASRHGQ QESLNFPLFG QSLEVPKSVV 120 PNNHFPDTLP SLFNAAENFG YDGTMGDMSR KWDFNKFFMP PTERMGFDTH PNGWISSENN 180 ASVSSDGNEL SLSLATCSGM SNLSLHGRQL GSTEQASSCN SKSFSLGFNS NSNRPIPVLQ 240 CSSGSNTYLH IMQEILSEIA SYSLGNFDQM GYKQIGSDDF SDGNNTFEDH INPILKSRGV 300 EMKKKHLLAL LEMVDERYNQ CLDEIHTVIS AFHAVTELNP QIHACFSLHT ITFFYKSLRE 360 RISNHILSMG ADYNTMDPGE EELSSFVPKQ WALQQLRRKD HQLWRPQRGL PEKSVSVLRA 420 WMFQNFLHPY PKDAEKQLLA VKSGLTRSQV SNWFINARVR LWKPMIEEMY LEMNRRSRDE 480 ETARNSQYHT

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MENSGFNMPM GMAAENFIIP DENYPPAAMV SFNQKAFLDQ NHHIMPGFPM LSMIPGEPVN  60
GSGITNPTEH LGSNFPSIGH MDVPISATAL AALLASRHGQ QESLNFPLFG QSLEVPKSVV  120
PNNHFPDTLP SLFNAAENFG YDGTMGDMSR KWDFNKFFMP PTERMGFDTH PNGWISSENN  180
ASVSSDGNEL SLSLATCSGM SNLSLHGRQL GSTEQASSCN SKSFSLGFNS NSNRPIPVLQ  240
CSSGSNTYLH IMQEILSEIA SYSLGNFDQM GYKQIGSDDF SDGNNTFEDH INPILKSRGV  300
EMKKKHLLAL LEMVDERYNQ CLDEIHTVIS AFHAVTELNP QIHACFSLHT ITFFYKSLRE  360
RISNHILSMG ADYNTMDPGE EELSSFVPKQ WALQQLRRKD HQLWRPQRGL PEKSVSVLRA  420
WMFQNFLHPY PKDAEKQLLA VKSGLTRSQV SNWFINARVR LWKPMIEEMY LEMNRRSRDE  480
ETARNSQYHT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32980.1	3e-96	TALE family protein