PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024994443.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 28134.8 Da PI: 6.4017 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 8.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEd+ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl XP_024994443.1 14 RGAWSDEEDKLLTNYIQTHGEGQWRSMPSKAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48.8 | 1.7e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E e +++++ +G++ W+ Ia ++ gRt++++k++w+++l XP_024994443.1 67 RGNFTADENETIIRLHSIHGSR-WSFIATELA-GRTDNEIKNHWNSHL 112 89********************.*********.************986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence |
MGRAPCCSKV GLHRGAWSDE EDKLLTNYIQ THGEGQWRSM PSKAGLLRCG KSCRLRWMNY 60 LRPGIKRGNF TADENETIIR LHSIHGSRWS FIATELAGRT DNEIKNHWNS HLKEKVLQPE 120 VPKRIKKPKK KVHNKSKTKV LEVAERAVEI VPDQPASSTS SLSLRKSTSF DNGASSGESS 180 SCTFEADPVT TDFRWPELFD MEGASSVDGL NMDGFDLLML KDDESEMLEK LYDECWLLLQ 240 DGDGDGDAIM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G49330.1 | 1e-59 | MYB family protein |