PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024994223.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 259aa MW: 29053.6 Da PI: 7.2036 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.2 | 5.1e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l +++ G +W++ ++ g+ R++k+c++rw +yl XP_024994223.1 14 KGAWSQDEDNKLRAYIETCGHSNWRKLPKLAGLSRCGKSCRLRWMNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5.2e-16 | 68 | 112 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g++T++E++ v ++++lG++ W+ Ia++++ gR+++++k++w+++l XP_024994223.1 68 GKFTKDEEDVVVALHNKLGNK-WSMIAARLP-GRSDNEIKNYWHTHL 112 89*******************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence |
MVRAPCFDKH GMKKGAWSQD EDNKLRAYIE TCGHSNWRKL PKLAGLSRCG KSCRLRWMNY 60 LHPNVKHGKF TKDEEDVVVA LHNKLGNKWS MIAARLPGRS DNEIKNYWHT HLKNRAPKDQ 120 TVLQTEQDGN VEPSKGKAKA GCVVRKPSLK SQQEVDILLT ESSSSSSSSS SSYYSTISDP 180 NESSPSSLSV SDANVTPKCS DEVAGSLWID QFLWDKDHSI MLSSDKMFSP LGVGADDFIF 240 SEDNAMDDVL LWSNLDLYY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 5e-55 | MYB family protein |