PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024994176.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 271aa MW: 30267.6 Da PI: 5.2671 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.6e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEd+ll d+++ +G g+W++ +++ g+ R++k+c++rw +yl XP_024994176.1 14 RGAWSDEEDKLLTDYIQTHGEGQWRSLPSKAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.5 | 1.1e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E +++++++ +G++ W+ Ia +++ gRt++++k++w+++l XP_024994176.1 67 RGNFTADENDIIIRLHSVHGNR-WSFIATELP-GRTDNEIKNHWNSHL 112 89********************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence |
MGRAPCCSKV GLHRGAWSDE EDKLLTDYIQ THGEGQWRSL PSKAGLLRCG KSCRLRWMNY 60 LRPGIKRGNF TADENDIIIR LHSVHGNRWS FIATELPGRT DNEIKNHWNS HLKRKEIDDG 120 GVEKEADASK NNKKPRKKKR KTDHKSTKVK SAEKSGEEPV PDQPSNSSLS SSQSASLNWG 180 KESSDNGIMS GASSSNCTID EGEGDLLASD FCWPNWTPLF DMEVAGSIEG ENDIPLELEV 240 CDLLISNNDD SQLLEKLYCE YLNLLEDGDS L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 141 | KKPRKKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 7e-62 | MYB family protein |