PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024994052.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 228aa MW: 26270.5 Da PI: 8.612 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.3 | 6.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l v+++G ++W+ + g+ R++k+c++rw +yl XP_024994052.1 14 KGKWSEEEDNKLRAFVEKYGHRNWRQLPTLAGLSRCGKSCRLRWMNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.4e-15 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T+eE++ +vd +++lG++ W+ a++++ gR+++++k++w++ XP_024994052.1 68 GNFTQEEEDVIVDIHNKLGNK-WAIMAAKLP-GRSDNDIKNYWHT 110 89*******************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MVRAPRFDKY GIKKGKWSEE EDNKLRAFVE KYGHRNWRQL PTLAGLSRCG KSCRLRWMNY 60 LRPNMKSGNF TQEEEDVIVD IHNKLGNKWA IMAAKLPGRS DNDIKNYWHT RLKNRVPKDR 120 THDQVFKNEQ IGSSKPNPTT GFRSNLEQLQ QQEVAVLVAV LSSKSPSSSS TTEPSPCWST 180 GSNHDDADST KIMPWFSEPS ESFWNEPFLL DDDAIISSYD NILSPMWC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 9e-52 | MYB family protein |