PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024993926.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 401aa MW: 45140.3 Da PI: 4.4854

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024993926.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.5e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde l+++++ G g+W++ +r g+ R++k+c++rw +yl XP_024993926.1 14 RGRWTAEEDEALIKYIQANGEGSWRSLPRNAGLLRCGKSCRLRWINYL 61 8*****************************99**********97 PP
2	Myb_DNA-binding	54.2	3.3e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T eE+e++v+++ lG++ W++Ia++++ gRt++++k++w+++l XP_024993926.1 67 RGNITSEEEEIIVKLHGSLGNR-WSAIASHLP-GRTDNEIKNYWNSHL 112 7999****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MGRTPCCQKE GLKRGRWTAE EDEALIKYIQ ANGEGSWRSL PRNAGLLRCG KSCRLRWINY 60 LRGDLKRGNI TSEEEEIIVK LHGSLGNRWS AIASHLPGRT DNEIKNYWNS HLRRKMYKYF 120 RGKSDSTLNS INVYNMVQTN RRIGRVSRCI AKKYNKNRVV DNNKKPPPPP PPPPPPPPSA 180 SNELDVETVN EETTDGNYNS ICVKKNVTGS RACGIKSSNL EEERENQDLG PDEYGIQDDE 240 LMDISKFLGS GTMDLDGLLS LLDEEQPEKH LADHTSSVVK SAKKAEAEDE FLSLDSSEAM 300 GFCSNGDLME LRFEGDDTLI WLWEEDDQEE PQKVLADMSV ESAKKAEIED EILSFKSSEA 360 MGSCFNGDSM EFEFEGDDMV PWLSEDDDFE ALLLGFSGSV L

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MGRTPCCQKE GLKRGRWTAE EDEALIKYIQ ANGEGSWRSL PRNAGLLRCG KSCRLRWINY  60
LRGDLKRGNI TSEEEEIIVK LHGSLGNRWS AIASHLPGRT DNEIKNYWNS HLRRKMYKYF  120
RGKSDSTLNS INVYNMVQTN RRIGRVSRCI AKKYNKNRVV DNNKKPPPPP PPPPPPPPSA  180
SNELDVETVN EETTDGNYNS ICVKKNVTGS RACGIKSSNL EEERENQDLG PDEYGIQDDE  240
LMDISKFLGS GTMDLDGLLS LLDEEQPEKH LADHTSSVVK SAKKAEAEDE FLSLDSSEAM  300
GFCSNGDLME LRFEGDDTLI WLWEEDDQEE PQKVLADMSV ESAKKAEIED EILSFKSSEA  360
MGSCFNGDSM EFEFEGDDMV PWLSEDDDFE ALLLGFSGSV L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	3e-72	MYB family protein