PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024993271.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARF
Protein Properties Length: 664aa    MW: 73582 Da    PI: 8.4046
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024993271.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.8e-23190291199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L  gD v+F   + ++
  XP_024993271.1 190 FCKSLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVCGDAVLFL--RGDD 281
                     99****************************963.3445679************************************************..3478 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     + l+++++r+
  XP_024993271.1 282 GVLRLGIRRA 291
                     8899999997 PP
2Auxin_resp98.21.2e-32314407182
      Auxin_resp   1 aahaastksvFevvYnPra............stseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +++++s +svF+v+YnPr             ++seF+v++++++k+l +++s+GmRfkm+feted+  rr +G+++g++d++pvrWp+SkWr+L
  XP_024993271.1 314 VVNSISRRSVFSVYYNPRHlsfafdfavqtgGSSEFIVPYNRFLKSLANSFSPGMRFKMRFETEDAGDRRSTGIITGINDINPVRWPGSKWRCL 407
                     67999*************744444444444468************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    
MQIKLLLLER ETETEKKRTM CGLIDLNTVN DELSTSLGAD SQSSPSSSSN GSGSGSGTAD  60
LLSSSPSKPV VSGSTPVVCC LELWHACAGP LISLPKKGNA VVYCPQGHLE QLQFAGDCLT  120
SGDFNLPPHV FCRVSDVKLH AESGTDDVYA QVSLIPDPQL EQKWRKGGRG VEYVEDDNGV  180
AEKSTTLHMF CKSLTASDTS THGGFSVPRR AAEDCFPPLD YKQQRPSQEL VAKDLHGTEW  240
KFRHIYRGQP RRHLLTTGWS AFVNKKKLVC GDAVLFLRGD DGVLRLGIRR ASQVKVASSL  300
PAFCSQQLND FATVVNSISR RSVFSVYYNP RHLSFAFDFA VQTGGSSEFI VPYNRFLKSL  360
ANSFSPGMRF KMRFETEDAG DRRSTGIITG INDINPVRWP GSKWRCLMVR WDCVEVTMQN  420
RVSPWEIERC GLVSEVGSFV TPLTKRSRTG FPSLKSDFPV LKDRTTSDFG ESMRFHKVLQ  480
GQEIYGFYRS SEINDVRNVG FGESLRFNRV LQGQEIMSNT QFGERIPSSG NLWTHPSTFL  540
HPLSSSSSPS SVLRFPQSIS QGPNDYPAHY TDNLKPLNRQ IHQDFFSPLK GRQEEPVSTV  600
RNSCRLFGFS LTEGSNGTKA SHCPNGDDRV IPKGPIVNTK VGGSCTNERV HQWCRSTDGC  660
LQGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-180ARF family protein