PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024993238.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 403aa MW: 45848 Da PI: 5.7738

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024993238.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.6	1.7e-51	18	146	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePwd+++k+k +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk + XP_024993238.1 18 VPPGFRFHPTEEELLHYYLRKKVAYEKIDL-DVIRDVDLNKLEPWDIQEKCKIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVI 111 69**************************.9***********964444222455******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s + + +g++ktLvfykgrap+g+k+dW+mheyrl XP_024993238.1 112 YS-SFTRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 146 .8889***************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MSEEEMNLSV NVNGQSKVPP GFRFHPTEEE LLHYYLRKKV AYEKIDLDVI RDVDLNKLEP 60 WDIQEKCKIG STPQNDWYFF SHKDKKYPTG TRTNRATAAG FWKATGRDKV IYSSFTRIGM 120 RKTLVFYKGR APHGQKSDWI MHEYRLDDNT VVTTQDACGS NLCDSTQEDG WVVCRVFKKK 180 NYHKALESPQ RSISASMDSR TQLQSLNKDG VLDQLLVYMG NGRSCKQEIE SLTANQNAMQ 240 QFVSPINDRF YHLPRLESPT MTLSPHDSSA SASFDQGLSF KPHINDFLTE AGQPRNADTS 300 QLVDDHDSRE RLDNWADLER LVACQLNGQV DSSKQMYTCY GEPNEEFCFP LDHDEPAGAP 360 QLCDSTTTTR PNQATYTSEI DLWSFARSSS SSSSPDPLCH LSV

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MSEEEMNLSV NVNGQSKVPP GFRFHPTEEE LLHYYLRKKV AYEKIDLDVI RDVDLNKLEP  60
WDIQEKCKIG STPQNDWYFF SHKDKKYPTG TRTNRATAAG FWKATGRDKV IYSSFTRIGM  120
RKTLVFYKGR APHGQKSDWI MHEYRLDDNT VVTTQDACGS NLCDSTQEDG WVVCRVFKKK  180
NYHKALESPQ RSISASMDSR TQLQSLNKDG VLDQLLVYMG NGRSCKQEIE SLTANQNAMQ  240
QFVSPINDRF YHLPRLESPT MTLSPHDSSA SASFDQGLSF KPHINDFLTE AGQPRNADTS  300
QLVDDHDSRE RLDNWADLER LVACQLNGQV DSSKQMYTCY GEPNEEFCFP LDHDEPAGAP  360
QLCDSTTTTR PNQATYTSEI DLWSFARSSS SSSSPDPLCH LSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	1e-111	NAC family protein