PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024993148.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 351aa MW: 38201.1 Da PI: 7.2024

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024993148.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.1	5.8e-31	183	241	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver+++dp+++++tY+geH h+ XP_024993148.1 183 SDVWSWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNRSDPDMFIVTYTGEHSHP 241 79**********************9988**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MEVDWDLHAV VRACCSTASS SSSSVAAPSS TTTTTSTSAA AAAGVAPTWP VDAYNQTKSS 60 FLDENFMGFF PDPFQSRNNN SIEHLLNDLN NPLEFPNLQK PPPSPQSLPI SPLSVLGGLQ 120 DPPPNNHHHH HHHHHNQLKQ LQGKQQSFGI SRCTTSNAQS TRSKKRKNQM KRVCQVPAEG 180 LSSDVWSWRK YGQKPIKGSP YPRGYYRCST SKGCLARKQV ERNRSDPDMF IVTYTGEHSH 240 PVPTHRNSLA GSTRNKPTTS GDDVDTNKTK PTSSPPVSPP ASQSPATEKA EDNDTDDDNF 300 DMVMEMDDTF FEGLDELVGP VTPTTSTASP PFPWLSNKIV ATTSTTAAGG S

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MEVDWDLHAV VRACCSTASS SSSSVAAPSS TTTTTSTSAA AAAGVAPTWP VDAYNQTKSS  60
FLDENFMGFF PDPFQSRNNN SIEHLLNDLN NPLEFPNLQK PPPSPQSLPI SPLSVLGGLQ  120
DPPPNNHHHH HHHHHNQLKQ LQGKQQSFGI SRCTTSNAQS TRSKKRKNQM KRVCQVPAEG  180
LSSDVWSWRK YGQKPIKGSP YPRGYYRCST SKGCLARKQV ERNRSDPDMF IVTYTGEHSH  240
PVPTHRNSLA GSTRNKPTTS GDDVDTNKTK PTSSPPVSPP ASQSPATEKA EDNDTDDDNF  300
DMVMEMDDTF FEGLDELVGP VTPTTSTASP PFPWLSNKIV ATTSTTAAGG S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	1e-57	WRKY family protein