PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024992338.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 282aa MW: 31806.9 Da PI: 7.4086 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W +eEd+ll+d++++ G g+W++ ++ g+ R++k+c++rw +yl XP_024992338.1 14 RGPWAQEEDDLLIDYINKNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.5e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++TteE++l +++++ lG++ W++Ia+ ++ gRt++++k+ w+++l XP_024992338.1 67 RGPFTTEEEKLVIQLHAILGNR-WAAIAAQLP-GRTDNEIKNLWNTHL 112 89********************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence |
MVRAPCCEKT GLKRGPWAQE EDDLLIDYIN KNGHGSWRSL PKLAGLLRCG KSCRLRWTNY 60 LRPDIKRGPF TTEEEKLVIQ LHAILGNRWA AIAAQLPGRT DNEIKNLWNT HLRKRLVSMG 120 IDPQTHEPSC SDSRLKRPPA SPSTRHMAQW ESARMEAEAR LSMESSASVS VLLSSPNKST 180 TSTDYFLRIW HSEVGESFQN LNKGKMGCFS PASQTSESNT TIETEPKPYR EPEPRLDGVT 240 FCQGFTRASS PCEMEDSSDT SLQLFFDFAG LNDMSFLEAQ FN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 1e-111 | MYB family protein |