PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992317.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 391aa MW: 43465 Da PI: 9.9542

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992317.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.9	3e-14	72	159	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W+ev++ + +++ + ++ +qCk++++ ++k+yk +k+ ++ + st+ ++d+l+ XP_024992317.1 72 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVADIVsSREDYmkaPKTDIQCKNRIDTVKKKYKLEKAKIASG--GGPSTWGFYDRLD 159 7***********************************844555111556779****************97..67779****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MEDDEESQSH PSAGSGSPDS PRSNRRITVT VASAAPPQNT LTLALPIQQP RTVGGVGGGG 60 SGGGGGGGRE DCWSEGATAV LIDAWGERYL ELSRGNLKQK HWKEVADIVS SREDYMKAPK 120 TDIQCKNRID TVKKKYKLEK AKIASGGGPS TWGFYDRLDQ LIGPTATGKS GSSSLTTPPP 180 LRAVPMGIPV GVRSAPVQSL RLKQQQERQQ QLHLQQQQQQ QLQQQRKRLR PPPAYSDSSE 240 SEPEPSPDSP ESDSYEQKRH RLPFNASSTG RQQQDRGRGG REKNWGDSVR ELTKAIMKFG 300 EAYEQAESSK LQQMVEMQKQ SMKFAKELEL QRMQFFMKTQ LELSQLKHSR RGVGNNNNNH 360 HHSHNHNQSL NHHSSNHNNI NNNNHSDDSN N

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MEDDEESQSH PSAGSGSPDS PRSNRRITVT VASAAPPQNT LTLALPIQQP RTVGGVGGGG  60
SGGGGGGGRE DCWSEGATAV LIDAWGERYL ELSRGNLKQK HWKEVADIVS SREDYMKAPK  120
TDIQCKNRID TVKKKYKLEK AKIASGGGPS TWGFYDRLDQ LIGPTATGKS GSSSLTTPPP  180
LRAVPMGIPV GVRSAPVQSL RLKQQQERQQ QLHLQQQQQQ QLQQQRKRLR PPPAYSDSSE  240
SEPEPSPDSP ESDSYEQKRH RLPFNASSTG RQQQDRGRGG REKNWGDSVR ELTKAIMKFG  300
EAYEQAESSK LQQMVEMQKQ SMKFAKELEL QRMQFFMKTQ LELSQLKHSR RGVGNNNNNH  360
HHSHNHNQSL NHHSSNHNNI NNNNHSDDSN N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	3e-56	Trihelix family protein