PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992301.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family TCP
Protein Properties Length: 407aa    MW: 45786.9 Da    PI: 6.6141
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992301.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.62.3e-381042492132
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceaesss 79 
                      gkkdrhskihT++g+RdRR+Rls+++a++fFdL d LGfdk+sktieWL+ ++k+ai e t++                 s s+ s+c      
  XP_024992301.1 104 VGKKDRHSKIHTAQGLRDRRMRLSVHTARKFFDLNDLLGFDKASKTIEWLFSKSKKAIEEVTESfqsddaaqaavcgetieSESPLSAC------ 192
                     68**************************************************************9877544444444333222222344...... PP

             TCP  80 ssasnsssg...........kaaksaakskksqksaasalnlakesrakarararertrekmri 132
                        +n+s +            + +s++ +  ++++  +     +es+ kar+++rer      i
  XP_024992301.1 193 ---ENESVNdiitatdkgenLELQSDQIRDTNSRKWMEIYPSVRESKGKAREESRERM----VI 249
                     ...2222224444332222222222222222333333333344455566666666654....44 PP
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    
MDYMFPSRNT ETLLVSSDKL TNHENVNSSH EEEPPLFLQF PSPFLDMDTT TILPNLHQQH  60
HLSTHGCRTT TVSSLNKPMK LSNATSNPLA LASKGKCVRK RRSVGKKDRH SKIHTAQGLR  120
DRRMRLSVHT ARKFFDLNDL LGFDKASKTI EWLFSKSKKA IEEVTESFQS DDAAQAAVCG  180
ETIESESPLS ACENESVNDI ITATDKGENL ELQSDQIRDT NSRKWMEIYP SVRESKGKAR  240
EESRERMVIK HLEKPKQLFE ADPEVHLNQP QLGFSENPDN HNIEESPCFP LEYSNTYHFL  300
KQLHLDNTVS KTNTYLGNIT SISSTNCSMF DHYNKNIAEP PAGWLNSRNT FLGFLGGWDS  360
GSSRMESGNP LTVPNIAPLK GSTNGENPNS SIISSDFVNF HSQNQGQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-27TCP family protein