PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992161.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 503aa MW: 56126.7 Da PI: 7.1777

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992161.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.8e-05	10	32	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k++++ +L H+r+H XP_024992161.1 10 FVCKSCDKRYPSGKSLGGHMRSH 32 89********************9 PP
2	zf-C2H2	11.1	0.0013	110	131	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F + L H+ H XP_024992161.1 110 VCKQCGKGFQSLKALCGHMAFH 131 6******************988 PP
3	zf-C2H2	11.3	0.0011	445	467	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp+C ++F++ L H r+H XP_024992161.1 445 HKCPICFRMFKSGQALGGHKRSH 467 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence
MDEDHDELRF VCKSCDKRYP SGKSLGGHMR SHVIAAAANS AESDDKFDPI KKLTTLIING 60 NGNGNGNGNG NGNGNENGNS SSYGLRENPK KSWRAVGSSS STLPFPNEKV CKQCGKGFQS 120 LKALCGHMAF HSEKDRGLKD YDHSWTSENL DQDDDDKLIG DSHSDTEEND LQDPSCVTRS 180 KSKRYRKVVV KPSSFSLTNT NTSNNSNYNY GSSSVSEIDE LEQEEVAMCL MMLSKDSTNW 240 AGVNSVVESS DNNSVVLETK LSSIDMKNGI KEWNLAKNKS SVVDPETESF QFENSNSGYC 300 RNGTKKVESD ISVEELLRNG GDQHKNRSKG VKGFNYRDLT YEEKLEIRRN LFKEFGYNDS 360 LKKRIRDDDD SYNPEGDGSY KKRNKYECLN CNKTFSSFQG LGGHRPCHKK NNAFGSGGNS 420 SEGEFSRNHK AKFEKKMRPK KNKGHKCPIC FRMFKSGQAL GGHKRSHSIN GSEERIDHMA 480 AIENEGPTYT DMIDLNLPAP EED

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence

MDEDHDELRF VCKSCDKRYP SGKSLGGHMR SHVIAAAANS AESDDKFDPI KKLTTLIING  60
NGNGNGNGNG NGNGNENGNS SSYGLRENPK KSWRAVGSSS STLPFPNEKV CKQCGKGFQS  120
LKALCGHMAF HSEKDRGLKD YDHSWTSENL DQDDDDKLIG DSHSDTEEND LQDPSCVTRS  180
KSKRYRKVVV KPSSFSLTNT NTSNNSNYNY GSSSVSEIDE LEQEEVAMCL MMLSKDSTNW  240
AGVNSVVESS DNNSVVLETK LSSIDMKNGI KEWNLAKNKS SVVDPETESF QFENSNSGYC  300
RNGTKKVESD ISVEELLRNG GDQHKNRSKG VKGFNYRDLT YEEKLEIRRN LFKEFGYNDS  360
LKKRIRDDDD SYNPEGDGSY KKRNKYECLN CNKTFSSFQG LGGHRPCHKK NNAFGSGGNS  420
SEGEFSRNHK AKFEKKMRPK KNKGHKCPIC FRMFKSGQAL GGHKRSHSIN GSEERIDHMA  480
AIENEGPTYT DMIDLNLPAP EED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	2e-32	C2H2 family protein