PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024991675.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 539aa MW: 60082.1 Da PI: 4.7072

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024991675.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.1	3.4e-53	13	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv +yL++kv gk++++ ++i++vd+ykvePwdLp +++k+++ ewyfFs dkk +++r+nrat++gyWk+tgkd++v+ XP_024991675.1 13 LAPGFRFHPTDEELVRYYLTRKVCGKPFRF-DAISDVDVYKVEPWDLPglSRLKTRDLEWYFFSVLDKKCGNSSRTNRATEKGYWKTTGKDRAVH 106 579************************9.99***********6448888999*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++vg+kktLv+++grapkge+t+Wvmheyrl XP_024991675.1 107 H-RSQQVGMKKTLVYHSGRAPKGERTNWVMHEYRL 140 .999***************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MALAIGSAAA SSLAPGFRFH PTDEELVRYY LTRKVCGKPF RFDAISDVDV YKVEPWDLPG 60 LSRLKTRDLE WYFFSVLDKK CGNSSRTNRA TEKGYWKTTG KDRAVHHRSQ QVGMKKTLVY 120 HSGRAPKGER TNWVMHEYRL MDQELQNAGH VQNAFVLCRI FHKSGSGPKN GEKYGAPFVE 180 EEWEDDDELV LVPKQEDHTE KLPVDEDSYL NANEIEQILG TDMPREVGPL PLTFDEGNNV 240 SCADISATVT NDPRISLLDH VGGSESQADR SDRSKLFDQA VQNELDLGSV NHEYIGEPDD 300 TMNFDMDYLL DEPYFDAITG DLSLDDSLFF EANDLKHPVE SDPGLDMLDE YLSFSNSDFD 360 NLQHNLVSVG SEQNILPDSS LTLKNVNDQT HQVIEASQAF EGPKDDIASS SKKDMASFPF 420 MKKASYMLGN ISAPPAFASE FPTKYLASEA LGSTHVTSGM IRISSNVSFG EGAVDLSLGK 480 HAQLNIVLSF GVGQRGVNHP HEGGKANSRN WFYCVFLWIL VLSLSFKIGS LICPRSLMS

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MALAIGSAAA SSLAPGFRFH PTDEELVRYY LTRKVCGKPF RFDAISDVDV YKVEPWDLPG  60
LSRLKTRDLE WYFFSVLDKK CGNSSRTNRA TEKGYWKTTG KDRAVHHRSQ QVGMKKTLVY  120
HSGRAPKGER TNWVMHEYRL MDQELQNAGH VQNAFVLCRI FHKSGSGPKN GEKYGAPFVE  180
EEWEDDDELV LVPKQEDHTE KLPVDEDSYL NANEIEQILG TDMPREVGPL PLTFDEGNNV  240
SCADISATVT NDPRISLLDH VGGSESQADR SDRSKLFDQA VQNELDLGSV NHEYIGEPDD  300
TMNFDMDYLL DEPYFDAITG DLSLDDSLFF EANDLKHPVE SDPGLDMLDE YLSFSNSDFD  360
NLQHNLVSVG SEQNILPDSS LTLKNVNDQT HQVIEASQAF EGPKDDIASS SKKDMASFPF  420
MKKASYMLGN ISAPPAFASE FPTKYLASEA LGSTHVTSGM IRISSNVSFG EGAVDLSLGK  480
HAQLNIVLSF GVGQRGVNHP HEGGKANSRN WFYCVFLWIL VLSLSFKIGS LICPRSLMS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10500.1	1e-125	NAC family protein