PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024991672.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 779aa MW: 86744.4 Da PI: 4.9792

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024991672.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.4	1e-47	10	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp+G+rF+Ptdeel+++yL+ k++g e+ ++i+evd++k ePwdLp + v++ ++ew+fF+++d+ky++g+r nrat +gyWkatgkd+ ++ XP_024991672.1 10 LPVGYRFRPTDEELINHYLRLKINGYIDEV-SCIREVDVCKKEPWDLPdlSVVDSIDNEWFFFCPKDRKYQNGQRLNRATIAGYWKATGKDRMIK 103 799********************99888.89**********96447777889********************************9 PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +++++g kktLvfy+grapkge+t+Wv+hey + XP_024991672.1 104 TTrGNHVIGRKKTLVFYTGRAPKGERTHWVIHEYCA 139 9857778*************************75 PP

Sequence ? help Back to Top
Protein Sequence Length: 779 aa Download sequence
MMNVLPAKYL PVGYRFRPTD EELINHYLRL KINGYIDEVS CIREVDVCKK EPWDLPDLSV 60 VDSIDNEWFF FCPKDRKYQN GQRLNRATIA GYWKATGKDR MIKTTRGNHV IGRKKTLVFY 120 TGRAPKGERT HWVIHEYCAT EKELDGTHPG QSPFVLCRLF KKHDGKDENF GGTNSVDVDQ 180 SIASPLSNVK SSTEDPPSDP VTPMLTGQPE VQPSSNNSWA IEDSDRTSVD PPHYFDWHTM 240 NHENEMPDVD LDEALNALCD PIPNDLDSKI FSPLHSQMHL EFGSSYQGNP TLCNPSNEHS 300 GYGTNVKDMM EFLENVLVEP DHFPIEDTGY NEALAAQASM QEDHVKETGF ISESGGEMVL 360 KEPSASGFSS RGPSVQDSGR PLHMAHEMYR PAYAGPSEVF DRVYLQSLDI ISRPPAEDQV 420 HNLVKEEQSE NNFGTGITIK SRQKPKPVGL PSQGTANRRI RLNVNLQISS INQHPLPNWS 480 STDENHDEKS SLTEMDMDCF PSEDAEKGSA AQPSIQEDQV KEAESSGNGN VNSLVKEEKF 540 SKSDGKNDGG TGIIIRTRKG PELPDLPSQG SASRRIHLSV NRLSSINQKQ PPPSMSSSDE 600 NHEEKSSATE VDCTRFEDHV KEAESSYKFP EANAILLPPA EDQLNSDSEN NSATGIIIRT 660 RQNQVPDLPS QGTANRRIRL QKKPRFIHQD QLLNLGTTEE GLDEKSCVTE AKEGTEILTD 720 DETVDQDSSS NVIQAKKPSL FSRFKAALTS IPEVLHMPKV LIVVGLCAGV VALRKHVSV

Sequence ? help Back to Top

Protein Sequence Length: 779 aa Download sequence

MMNVLPAKYL PVGYRFRPTD EELINHYLRL KINGYIDEVS CIREVDVCKK EPWDLPDLSV  60
VDSIDNEWFF FCPKDRKYQN GQRLNRATIA GYWKATGKDR MIKTTRGNHV IGRKKTLVFY  120
TGRAPKGERT HWVIHEYCAT EKELDGTHPG QSPFVLCRLF KKHDGKDENF GGTNSVDVDQ  180
SIASPLSNVK SSTEDPPSDP VTPMLTGQPE VQPSSNNSWA IEDSDRTSVD PPHYFDWHTM  240
NHENEMPDVD LDEALNALCD PIPNDLDSKI FSPLHSQMHL EFGSSYQGNP TLCNPSNEHS  300
GYGTNVKDMM EFLENVLVEP DHFPIEDTGY NEALAAQASM QEDHVKETGF ISESGGEMVL  360
KEPSASGFSS RGPSVQDSGR PLHMAHEMYR PAYAGPSEVF DRVYLQSLDI ISRPPAEDQV  420
HNLVKEEQSE NNFGTGITIK SRQKPKPVGL PSQGTANRRI RLNVNLQISS INQHPLPNWS  480
STDENHDEKS SLTEMDMDCF PSEDAEKGSA AQPSIQEDQV KEAESSGNGN VNSLVKEEKF  540
SKSDGKNDGG TGIIIRTRKG PELPDLPSQG SASRRIHLSV NRLSSINQKQ PPPSMSSSDE  600
NHEEKSSATE VDCTRFEDHV KEAESSYKFP EANAILLPPA EDQLNSDSEN NSATGIIIRT  660
RQNQVPDLPS QGTANRRIRL QKKPRFIHQD QLLNLGTTEE GLDEKSCVTE AKEGTEILTD  720
DETVDQDSSS NVIQAKKPSL FSRFKAALTS IPEVLHMPKV LIVVGLCAGV VALRKHVSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24590.2	9e-85	NAC family protein