PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024991498.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HSF
Protein Properties Length: 339aa    MW: 37519.6 Da    PI: 4.8763
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024991498.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.73.2e-37271172101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++++isw+e+g+sf+v++++efak++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++
  XP_024991498.1  27 FLTKTYQLVDDKTIDDVISWNEDGSSFIVWNPTEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKHLLCD 112
                     9*****************************************************************99.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  XP_024991498.1 113 IQRRK 117
                     ***98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MAPPPVERSG GESTAADTTA RSLPTPFLTK TYQLVDDKTI DDVISWNEDG SSFIVWNPTE  60
FAKDLLPKYF KHNNFSSFVR QLNTYGFRKV VPDRWEFSND CFRRGEKHLL CDIQRRKIAS  120
ATPAPAPAPT VAATPVVTVA ALSPAQRRTV SPSNSGEEQV MSSNSSRGAT TYLSRETTAC  180
GGIDAELIGE NERLRRENVE LNRELSQMKN LCNSIYVMMS NYASNNPSEG NSSEHSQQQT  240
AAEAETTTVK PLDLLPLKRL SEGTHQGSTE AEEDISPRLF GVPIGVKRAR EGSDCEAAEQ  300
YHELQLQQPG SEVKSEPLDA NVDNKESTWM MKDREQALS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-83HSF family protein