PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024991236.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 303aa MW: 33241.5 Da PI: 7.5591

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024991236.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.3	2.9e-32	156	213	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp++v++tYeg+H h+ XP_024991236.1 156 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSTDPTTVITTYEGQHCHH 213 8******************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence
MDDQNSADPV TGGFSTDSTW TLHGDYGFFG INDTRENSIL SEFGWNFQQP QPEFDRIDSG 60 GCCGVPEDTN PTTSAVAVQT QAGSVENTGD VSMSNPLVSS SSSEDRPDSS AASCDVASSG 120 KPPSSETGGK VKKKGTKRIR QQRFAFMTKS EIDHLEDGYR WRKYGQKAVK NSPFPRSYYR 180 CTNSKCTVKK RVERSSTDPT TVITTYEGQH CHHTVGFPRG LISHEGAYAR QLAPPSTLQQ 240 FNYLRANLPR VGDHLGASQS QPQVVVSETG DHSSHRKPQA SFQDSRVDQG LLGDIVPPIM 300 RNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	1e-54	WRKY family protein