PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024991192.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SBP

Protein Properties

Length: 404aa MW: 44851.6 Da PI: 6.9691

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024991192.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.6	1.1e-40	176	252	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dls+akeyhr+h+vC++hsk+p+v+v+gle+rfCqqCsrfh++sefD+ekrsCrrrL++hn+rrrk+q+ XP_024991192.1 176 CQVEGCNLDLSSAKEYHRKHRVCDTHSKCPKVIVAGLERRFCQQCSRFHSMSEFDDEKRSCRRRLSDHNARRRKPQQ 252 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MEWNTKWDWE NLDVFNSKGA ASSKKLQSAY WAIGEGEDIE GSFNLSGVVA GDGGSASDVG 60 NNSSTKSSIS ASTESSFKDG MKGSNISFEG FGCFPDSYSK EKEFDRGELN VTSPLEASVC 120 SGEPFIGLEL GKRTYFENTY VKSNNKSSSI LGIPVSSVSM GKKVKSSCQS TPISHCQVEG 180 CNLDLSSAKE YHRKHRVCDT HSKCPKVIVA GLERRFCQQC SRFHSMSEFD DEKRSCRRRL 240 SDHNARRRKP QQEPNQFNSR SPYSSFYGVQ LSDALNMPTL ALNRSVPSKG ARAEIFDLGF 300 EEPLSSNVDA VDLRRALSLL SNNNNSWGSC DPNSIVLDHH HRMQHSASPS MPQPAVPALS 360 SQDYWQADQQ SMDPSIHVKT NNHFQEFQIF KSPYENSFLF HPNG

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MEWNTKWDWE NLDVFNSKGA ASSKKLQSAY WAIGEGEDIE GSFNLSGVVA GDGGSASDVG  60
NNSSTKSSIS ASTESSFKDG MKGSNISFEG FGCFPDSYSK EKEFDRGELN VTSPLEASVC  120
SGEPFIGLEL GKRTYFENTY VKSNNKSSSI LGIPVSSVSM GKKVKSSCQS TPISHCQVEG  180
CNLDLSSAKE YHRKHRVCDT HSKCPKVIVA GLERRFCQQC SRFHSMSEFD DEKRSCRRRL  240
SDHNARRRKP QQEPNQFNSR SPYSSFYGVQ LSDALNMPTL ALNRSVPSKG ARAEIFDLGF  300
EEPLSSNVDA VDLRRALSLL SNNNNSWGSC DPNSIVLDHH HRMQHSASPS MPQPAVPALS  360
SQDYWQADQQ SMDPSIHVKT NNHFQEFQIF KSPYENSFLF HPNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	4e-53	SBP family protein