PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024991191.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SBP

Protein Properties

Length: 447aa MW: 49561.8 Da PI: 6.9018

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024991191.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.4	1.4e-40	176	252	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dls+akeyhr+h+vC++hsk+p+v+v+gle+rfCqqCsrfh++sefD+ekrsCrrrL++hn+rrrk+q+ XP_024991191.1 176 CQVEGCNLDLSSAKEYHRKHRVCDTHSKCPKVIVAGLERRFCQQCSRFHSMSEFDDEKRSCRRRLSDHNARRRKPQQ 252 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MEWNTKWDWE NLDVFNSKGA ASSKKLQSAY WAIGEGEDIE GSFNLSGVVA GDGGSASDVG 60 NNSSTKSSIS ASTESSFKDG MKGSNISFEG FGCFPDSYSK EKEFDRGELN VTSPLEASVC 120 SGEPFIGLEL GKRTYFENTY VKSNNKSSSI LGIPVSSVSM GKKVKSSCQS TPISHCQVEG 180 CNLDLSSAKE YHRKHRVCDT HSKCPKVIVA GLERRFCQQC SRFHSMSEFD DEKRSCRRRL 240 SDHNARRRKP QQEPNQFNSR SPYSSFYDTH LVQTRPAISS TWESTCNSKY SVVQVKAENF 300 GGFDVLSHST GVQLSDALNM PTLALNRSVP SKGARAEIFD LGFEEPLSSN VDAVDLRRAL 360 SLLSNNNNSW GSCDPNSIVL DHHHRMQHSA SPSMPQPAVP ALSSQDYWQA DQQSMDPSIH 420 VKTNNHFQEF QIFKSPYENS FLFHPNG

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MEWNTKWDWE NLDVFNSKGA ASSKKLQSAY WAIGEGEDIE GSFNLSGVVA GDGGSASDVG  60
NNSSTKSSIS ASTESSFKDG MKGSNISFEG FGCFPDSYSK EKEFDRGELN VTSPLEASVC  120
SGEPFIGLEL GKRTYFENTY VKSNNKSSSI LGIPVSSVSM GKKVKSSCQS TPISHCQVEG  180
CNLDLSSAKE YHRKHRVCDT HSKCPKVIVA GLERRFCQQC SRFHSMSEFD DEKRSCRRRL  240
SDHNARRRKP QQEPNQFNSR SPYSSFYDTH LVQTRPAISS TWESTCNSKY SVVQVKAENF  300
GGFDVLSHST GVQLSDALNM PTLALNRSVP SKGARAEIFD LGFEEPLSSN VDAVDLRRAL  360
SLLSNNNNSW GSCDPNSIVL DHHHRMQHSA SPSMPQPAVP ALSSQDYWQA DQQSMDPSIH  420
VKTNNHFQEF QIFKSPYENS FLFHPNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	7e-54	SBP family protein