PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024991164.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 244aa MW: 26921.2 Da PI: 6.7844 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.3 | 1e-19 | 17 | 62 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed lv++v+q+G+++W++I+++++ gR++k+c++rw + XP_024991164.1 17 KGSWSPQEDATLVKLVEQHGPRNWSLISSRIP-GRSGKSCRLRWCNQ 62 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3.2e-17 | 71 | 113 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T eEd+ +++a++ +G++ W+tI+r ++ gRt++ +k++w++ XP_024991164.1 71 PFTREEDDVILRAHAIHGNK-WSTISRLLP-GRTDNAIKNHWNST 113 89******************.*********.***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence |
MEAIEGGGGG VAGGKIKGSW SPQEDATLVK LVEQHGPRNW SLISSRIPGR SGKSCRLRWC 60 NQLSPDVEHR PFTREEDDVI LRAHAIHGNK WSTISRLLPG RTDNAIKNHW NSTLRRRGLP 120 PGEVSLGSNS NSGVIKRPLA DPLSDSTQSD PPLKRQCSRT STDQSSCDGP ATVLTLLPPG 180 EMKAVEHVTE KNEEVDDDVD DKSTAEIEDT CLVTIMKRMI AEEVRIYINE IRDNKGPRIG 240 QIFQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 2e-53 | MYB family protein |