PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024991111.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 306aa    MW: 34464.8 Da    PI: 7.9847
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024991111.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.2e-172471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+d++++ G gtW++ ++  g++R++k+c++rw +yl
   XP_024991111.1 24 KGAWTPEEDKILLDYITKNGHGTWRSFPKLAGLRRCGKSCRLRWTNYL 71
                     79********************************************97 PP
2Myb_DNA-binding51.22.8e-1677122148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ eE++++ +++ +lG++ W++Ia++++ gRt++++k++w+++l
   XP_024991111.1  77 RGTFSFEEEQIIFQLHSLLGNK-WAAIAARLP-GRTDNEIKNYWNSHL 122
                      899*******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MKKRGRKEEK MGRLPCCDKG EVKKGAWTPE EDKILLDYIT KNGHGTWRSF PKLAGLRRCG  60
KSCRLRWTNY LRPDIKRGTF SFEEEQIIFQ LHSLLGNKWA AIAARLPGRT DNEIKNYWNS  120
HLRKRIPNNK GLNLQTKSAD TNPKLLSTNH MAEWDNARVE VDARLSMDPM LLSPATGVGD  180
CDYFLRAWNS EAGEAFQRAK DFNQAVCSIP SPRASSLIKV ESDSVVTMQA EPTFTVTSTG  240
ASCNQSVGEH MRCKIEAEEA TNSTSYSPNS YKAEKSSDIT LDLLLDFPND GEYLEYLQGE  300
PNDNSA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.12e-89MYB family protein