PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990328.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 283aa MW: 32689.9 Da PI: 7.7714

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990328.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.6	2.4e-53	11	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL++++ +k++++ ++i+evdiyk++Pw+Lp k++ +e+ewyfF++rd+ky++g r+nra+ sgyWkatg+dk+++s XP_024990328.1 11 LPPGFRFHPTDEELIMFYLRNQALSKPCPV-SIIPEVDIYKFDPWQLPDKTEFGENEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKAIYS- 103 79**************************.89***********99999*************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vg+kk Lvfy+g+ pkg ktdW+mheyrl XP_024990328.1 104 GSKYVGVKKALVFYSGKPPKGIKTDWIMHEYRL 136 999**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
MVMVGRENSN LPPGFRFHPT DEELIMFYLR NQALSKPCPV SIIPEVDIYK FDPWQLPDKT 60 EFGENEWYFF TPRDRKYPNG VRPNRAAVSG YWKATGTDKA IYSGSKYVGV KKALVFYSGK 120 PPKGIKTDWI MHEYRLNESR SQPAKKIGSM RLDDWVLCRI YKKKSPGRPL EQREENTNSQ 180 NTATDDHNNV MELPSMKIPR TFSLAHLWEL ESLGPISHIL GDHNTDYDNN GRTESETTMG 240 MMTQSPTTFI GTGLKESHPL KFEDNHQHSL NHTSFFSPMF EFQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-116	NAC family protein